PROSITE documentation entries
PROSITE documentation entries describe protein domains, families and functional sites.
A single file containing all documentation entries can be found at https://ftp.expasy.org/databases/prosite/prosite.doc.
- The characters in positions 1 to 9 correspond to the documentation entry accession number. - The numerical characters in position 11 to 12 are used to indicate how many discriminators (profiles/matrices or patterns) are described by a documentation entry. ---------------------------------------------------------------------------- PDOC51657 1 (+)RNA virus helicase core domain profile PDOC00284 1 11-S plant seed storage proteins signature PDOC00633 2 14-3-3 proteins signatures PDOC00653 3 2'-5'-oligoadenylate synthases signatures and profile PDOC00168 1 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site PDOC01048 1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature PDOC00175 2 2Fe-2S ferredoxin-type iron-sulfur binding domain signature and profile PDOC00065 1 3-hydroxyacyl-CoA dehydrogenase signature PDOC00697 1 3-hydroxyisobutyrate dehydrogenase signature PDOC00116 2 3'5'-cyclic nucleotide phosphodiesterase domain signature and profile PDOC00997 1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature PDOC01031 1 4-hydroxybenzoyl-CoA thioesterase family active site PDOC00339 1 43 Kd postsynaptic protein signature PDOC51656 1 4Fe-4S domain profile PDOC00176 2 4Fe-4S ferredoxin-type iron-sulfur binding domain signature and profile PDOC51674 1 4Fe-4S WhiB-like (Wbl)-type iron-sulfur binding domain profile PDOC00627 2 5'-nucleotidase signatures PDOC51701 1 6-Cysteine (6-Cys) domain profile PDOC00390 1 6-phosphogluconate dehydrogenase signature PDOC00759 2 6-pyruvoyl tetrahydropterin synthase signatures PDOC00631 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature PDOC51893 1 A kinase-anchoring proteins AKAP-5 and AKAP-12 calmodulin (CaM)-binding motif profile PDOC00572 1 AAA-protein family signature PDOC51237 28 ABC transporter family profiles PDOC00364 2 ABC transporter integral membrane type-1 domain profiles PDOC00692 1 ABC transporter integral membrane type-2 domain profile PDOC51426 1 ABL domain profile PDOC51725 1 ABM domain profile PDOC00826 2 Acetate and butyrate kinases family signatures PDOC50980 2 Acetyl-coenzyme A carboxyltransferase domain profiles PDOC00423 2 Aconitase family signatures PDOC51671 2 ACT and ACT-like domain profiles PDOC51772 1 Actin cross-linking (ACD) domain profile PDOC00019 2 Actinin-type actin-binding domain signatures PDOC00340 3 Actins signatures PDOC00070 2 Acyl-CoA dehydrogenases signatures PDOC00686 2 Acyl-CoA-binding (ACB) domain signature and profile PDOC00136 3 Acylphosphatase-like domain signatures and profile PDOC00402 2 Acyltransferases ChoActase / COT / CPT family signatures PDOC52001 1 AD domain profile PDOC50215 1 ADAM type metalloprotease domain profile PDOC51533 1 ADD domain profile PDOC00419 1 Adenosine and AMP deaminase signature PDOC50141 1 Adenosine to inosine editase domain profile PDOC00837 2 Adenylate cyclase class-I signatures PDOC00104 1 Adenylate kinase signature PDOC00444 2 Adenylosuccinate synthetase signatures PDOC00297 1 ADF-H domain profile PDOC00229 1 Adipokinetic hormone family signature PDOC50974 1 AdoMet activation domain profile PDOC51255 1 ADP-dependent kinase (ADPK) domain profile PDOC00638 3 ADP-glucose pyrophosphorylase signatures PDOC00642 1 Adrenodoxin family, iron-sulfur binding region signature PDOC00247 1 Aerolysin type toxins signature PDOC51285 1 AGC-kinase C-terminal domain profile PDOC51641 1 Agenet-like domain profile PDOC60024 2 Agouti domain signature and profile PDOC51720 1 AIG1-type guanine nucleotide-binding (G) domain profile PDOC00654 2 Alanine dehydrogenase and pyridine nucleotide transhydrogenase signatures PDOC00332 1 Alanine racemase pyridoxal-phosphate attachment site PDOC00186 2 Albumin domain signature and profile PDOC00068 2 Aldehyde dehydrogenases active sites PDOC00061 3 Aldo/keto reductase family signatures PDOC00471 1 Aldose 1-epimerase putative active site PDOC00113 1 Alkaline phosphatase active site PDOC00447 1 Alkylbase DNA glycosidases alkA family signature PDOC51697 1 ALOG domain profile PDOC51325 1 Alpha box DNA-binding domain profile PDOC52024 3 Alpha-, beta-, and gammaherpesvirus glycoprotein L (gL) domains profiles PDOC00440 1 Alpha-2-macroglobulin family thiolester region signature PDOC00146 2 Alpha-carbonic anhydrases signature and profile PDOC00443 1 Alpha-galactosidase signature PDOC00643 2 Alpha-isopropylmalate and homocitrate synthases signatures PDOC00324 1 Alpha-L-fucosidase putative active site PDOC51158 1 Alpha-type protein kinase domain profile PDOC51690 1 Alphavirus core protein (CP) domain profile PDOC51520 1 Alphavirus nsp2 protease (nsp2pro) domain profile PDOC51743 1 Alphavirus-like methyltransferase (MT) domain profile PDOC51895 1 Alt a 1 (AA1)-like domain profile PDOC00494 1 Amidases signature PDOC00009 1 Amidation site PDOC00926 1 Amiloride-sensitive sodium channels signature PDOC00191 1 Amino acid permeases signature PDOC00161 1 Aminoacyl-transfer RNA synthetases class-I signature PDOC00363 3 Aminoacyl-transfer RNA synthetases class-II profiles PDOC00417 1 Aminopeptidase P and proline dipeptidase signature PDOC00098 1 Aminotransferases class-I pyridoxal-phosphate attachment site PDOC00518 1 Aminotransferases class-II pyridoxal-phosphate attachment site PDOC00519 1 Aminotransferases class-III pyridoxal-phosphate attachment site PDOC00618 1 Aminotransferases class-IV signature PDOC00514 1 Aminotransferases class-V pyridoxal-phosphate attachment site PDOC51112 1 AMMECR1 domain profile PDOC00937 1 Ammonium transporters signature PDOC50856 1 AMOP domain profile PDOC00906 2 Anaphylatoxin domain signature and profile PDOC00192 2 Anion exchangers family signatures PDOC50088 2 Ankyrin repeat and ankyrin repeat region profiles PDOC00195 2 Annexin repeat signature and profile PDOC50921 1 ANTAR domain profile PDOC00748 2 Antenna complexes alpha and beta subunits signatures PDOC51995 1 Anthrax toxin lethal factor (ATLF)-like domain profile PDOC50844 1 Antifreeze protein-like domain profile PDOC51252 1 Antistasin-like domain profile PDOC00598 4 AP endonucleases family 1 signatures and profile PDOC00599 4 AP endonucleases family 2 signatures and profile PDOC51032 1 AP2/ERF domain profile PDOC51087 1 ApaG domain profile PDOC51887 1 Aphthovirus leader protease (L(pro)) domain profile PDOC51499 1 APO domain profile PDOC00829 6 Apoptosis regulator proteins, Bcl-2 family BH motifs signatures/profiles PDOC00204 4 APP E1 and E2 domains profiles and CuBD and intracellular domains signatures PDOC51299 1 APSES-type HTH DNA-binding domain profile PDOC51901 1 Archaeal CBS proteins (ACP)-type metal binding (MB) domain profile PDOC50115 1 ARF GTPase-activating proteins domain profile PDOC50870 1 Arfaptin homology (AH) domain profile PDOC00613 2 ArgE / dapE / ACY1 / CPG2 / yscS family signatures PDOC00135 2 Arginase family signature and profile PDOC00488 2 Argininosuccinate synthase signatures PDOC51011 1 ARID domain profile PDOC50176 1 Armadillo/plakoglobin ARM repeat profile PDOC00513 1 Aromatic amino acids permeases signature PDOC00267 1 Arrestins signature PDOC51353 1 Arsenate reductase arsC family profile PDOC00661 2 ArsR-type HTH domain signature and profile PDOC51961 1 Arterivirus Nsp11 N-terminal/coronavirus NSP15 middle (AV-Nsp11N/CoV-Nsp15M) domain profile PDOC51538 1 Arterivirus nsp2 cysteine protease (AV CP) domain profile PDOC51493 1 Arterivirus nsp4 proteinase domain profile PDOC51539 2 Arterivirus papain-like cysteine protease alpha and beta (PCPalpha and PCPbeta) domain profiles PDOC00963 1 Arthropod CHH/MIH/GIH neurohormones family signature PDOC00184 2 Arthropod hemocyanins / insect LSPs signatures PDOC51306 2 ASD1 and ASD2 domains profiles PDOC00520 2 AsnC-type HTH domain signature and profile PDOC00132 3 Asparaginase / glutaminase active sites signatures and domain profile PDOC00714 2 Aspartate and glutamate racemases signatures PDOC00091 1 Aspartate and ornithine carbamoyltransferases signature PDOC00847 1 Aspartate-semialdehyde dehydrogenase signature PDOC00010 1 Aspartic acid and asparagine hydroxylation site PDOC00289 1 Aspartokinase signature PDOC00657 2 Aspartyl proteases, omptin family signatures PDOC60010 1 Assassin bug toxin signature PDOC51864 1 Astacin-like domain profile PDOC00932 1 ATP P2X receptors signature PDOC01020 1 ATP phosphoribosyltransferase signature PDOC00420 1 ATP synthase a subunit signature PDOC00137 1 ATP synthase alpha and beta subunits signature PDOC00526 1 ATP synthase c subunit signature PDOC00327 1 ATP synthase delta (OSCP) subunit signature PDOC00138 1 ATP synthase gamma subunit signature PDOC00185 2 ATP-binding cassette, ABC transporter-type, signature and profile PDOC00335 3 ATP-citrate lyase / succinyl-CoA ligases signatures PDOC51161 1 ATP-cone domain profile PDOC00295 3 ATP-dependent DNA ligase signatures and profile PDOC00803 1 ATP-dependent serine proteases, lon family, serine active site PDOC50975 1 ATP-grasp domain profile PDOC00017 1 ATP/GTP-binding site motif A (P-loop) PDOC00731 2 Autoinducer synthase family signature and profile PDOC51208 1 Autotransporter beta-domain profile PDOC00499 2 Avidin-like domain signature and profile PDOC51215 1 AWS domain profile PDOC51148 1 AXH domain profile PDOC51332 2 B12-binding and B12-binding N-terminal domain profiles PDOC50863 1 B3 DNA-binding domain profile PDOC50188 1 B30.2/SPRY domain profile PDOC51483 1 B5 domain profile PDOC00465 2 Bacterial chemotaxis sensory transducers signature and profile PDOC00763 1 Bacterial export FHIPEP family signature PDOC00796 1 Bacterial extracellular solute-binding proteins, family 1 signature PDOC00798 1 Bacterial extracellular solute-binding proteins, family 3 signature PDOC00799 1 Bacterial extracellular solute-binding proteins, family 5 signature PDOC00044 1 Bacterial histone-like DNA-binding proteins signature PDOC00283 1 Bacterial ice-nucleation proteins octamer repeat PDOC00397 1 Bacterial luciferase subunits signature PDOC00876 3 Bacterial microcompartment (BMC) domain signature and profile and BMC circularly permuted domain profile PDOC51932 1 Bacterial microcompartment vertex (BMV) domain profile PDOC00375 2 Bacterial quinoprotein dehydrogenases signatures PDOC00040 2 Bacterial regulatory proteins, araC family signature and profile PDOC00291 2 Bacterial rhodopsins signatures PDOC00558 1 Bacterial ribonuclease P protein component signature PDOC00493 1 Bacterial ring hydroxylating dioxygenases alpha-subunit signature PDOC00878 1 Bacterial type II secretion system protein C signature PDOC00683 1 Bacterial type II secretion system protein D signature PDOC00567 1 Bacterial type II secretion system protein E signature PDOC00682 1 Bacterial type II secretion system protein F signature PDOC00879 1 Bacterial type II secretion system protein N signature PDOC00755 1 Bacterial-type phytoene dehydrogenase signature PDOC60030 1 Bacteriocin class IIa family signature PDOC00475 1 Bacterioferritin signature PDOC00410 2 Bacteriophage-type RNA polymerase family active site signatures PDOC51035 1 BAG domain profile PDOC51038 1 BAH domain profile PDOC00977 1 Band 7 protein family signature PDOC51021 1 BAR domain profile PDOC00619 3 Barwin domain signatures and profile PDOC00036 2 Basic-leucine zipper (bZIP) domain signature and profile PDOC00957 1 Bax inhibitor-1 family signature PDOC01007 1 BCCT family of transporters signature PDOC50197 1 BEACH domain profile PDOC51783 1 BEACH-type PH domain profile PDOC51457 1 BEN domain profile PDOC51031 1 BESS domain profile PDOC00414 2 Beta-amylase active sites PDOC00667 1 Beta-eliminating lyases pyridoxal-phosphate attachment site PDOC00606 2 Beta-lactamases class B signatures PDOC00134 3 Beta-lactamases classes -A, -C, and -D active site PDOC51662 1 Beta-propeller phytase (BPP) domain profile PDOC51942 1 Betacoronavirus Nsp3c-C domain profile PDOC51994 1 Betacoronavirus Nsp3e group 2-specific marker (G2M) domain profile PDOC51945 1 Betacoronavirus Nsp3e nucleic acid-binding (NAB) domain profile PDOC51921 1 Betacoronavirus spike (S) glycoprotein S1 subunit C-terminal (CTD) domain profile PDOC51922 1 Betacoronavirus spike (S) glycoprotein S1 subunit N-terminal (NTD) domain profile PDOC51862 1 BetaSPN-type cysteine-stabilized alpha/beta (CS-alpha/beta) domain profile PDOC51658 1 Bifunctional nuclease (BFN) domain profile PDOC51127 1 Big-1 (bacterial Ig-like domain 1) domain profile PDOC51515 1 Bin3-type S-adenosyl-L-methionine (SAM) domain profile PDOC50979 1 Biotin carboxylation (BC) domain profile PDOC00167 1 Biotin-requiring enzymes attachment site PDOC51733 1 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile PDOC50968 1 Biotinyl/lipoyl domain profile PDOC00015 1 Bipartite nuclear localization signal profile PDOC00987 2 BIR repeat signature and profile PDOC51548 1 Birnavirus VP4 protease domain profile PDOC50925 1 BLUF domain profile PDOC51848 1 bMERB domain profile PDOC51714 1 Bms1-type guanine nucleotide-binding (G) domain profile PDOC00230 1 Bombesin-like peptides family signature PDOC50914 1 BON domain profile PDOC00253 1 Bowman-Birk serine protease inhibitors family signature PDOC50138 1 BRCA2 repeat profile PDOC50172 1 BRCT domain profile PDOC50869 1 BRICHOS domain profile PDOC50833 1 Brix domain profile PDOC51750 1 Bro-N domain profile PDOC51180 1 BRO1 domain profile PDOC00550 2 Bromodomain signature and profile PDOC51514 1 BRX domain profile PDOC50858 1 BSD domain profile PDOC50097 1 BTB domain profile PDOC00742 2 BTG family signatures PDOC51489 1 BUB1 N-terminal domain profile PDOC51279 1 Bucentaur C-terminal (BCNT-C) domain profile PDOC50927 1 Bulb-type lectin domain profile PDOC51277 1 BURP domain profile PDOC00089 2 C-5 cytosine-specific DNA methylases signatures PDOC51329 1 C-CAP/cofactor C-like domain profile PDOC00912 2 C-terminal cystine knot domain signature and profile PDOC00169 4 C-type cytochrome superfamily profiles PDOC00537 2 C-type lectin domain signature and profile PDOC00857 1 C1q domain profile PDOC51911 1 C2 Aida-type domain profile PDOC51381 1 C2 B9-type domain profile PDOC51650 2 C2 DOCK-type and DOCKER domains profiles PDOC00380 1 C2 domain profile PDOC51840 1 C2 NT-type domain profile PDOC51547 1 C2 phosphatidylinositol 3-kinase (PI3K)-type domain profile PDOC00205 2 Cadherin domain signature and profile PDOC00231 1 Calcitonin / CGRP / IAPP family signature PDOC00913 1 Calcium-binding EGF-like domain signature PDOC51894 1 Caliciviridae (CV) 3C-like protease (3CLpro) domain profile PDOC50021 1 Calponin homology (CH) domain profile PDOC00808 2 Calponin-like repeat signature and profile PDOC00636 3 Calreticulin family signatures PDOC00675 2 Calsequestrin signatures PDOC00530 1 cAMP phosphodiesterases class-II signature PDOC00004 1 cAMP- and cGMP-dependent protein kinase phosphorylation site PDOC00835 2 CAP protein signatures PDOC00660 2 CAP-Gly domain signature and profile PDOC00676 2 Carbamoyl-phosphate synthase subdomain signatures PDOC51759 1 Carbohydrate-binding module 15 (CBM15) domain profile PDOC50263 1 Carbon-nitrogen hydrolase domain profile PDOC00112 2 Carboxylesterases type-B signatures PDOC50209 1 CARD caspase recruitment domain profile PDOC00012 2 Carrier protein (CP) domain profile and phosphopantetheine attachment site signature PDOC51749 1 Cas9-type HNH domain profile PDOC00006 1 Casein kinase II phosphorylation site PDOC00845 1 Casein kinase II regulatory subunit signature PDOC00277 1 Caseins alpha/beta signature PDOC00864 4 Caspase family signatures and profiles PDOC00395 3 Catalase signatures and profile PDOC00729 2 Cathelicidins signatures PDOC00930 1 Caveolins signature PDOC51506 1 Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile PDOC00486 2 CBM1 (Carbohydrate-binding type-1) domain signature and profile PDOC51763 1 CBM10 (carbohydrate binding type-10) domain profile PDOC00485 2 CBM2 (carbohydrate-binding type-2) domain signature and profile PDOC51166 1 CBM20 (carbohydrate binding type-20) domain profile PDOC51159 1 CBM21 (carbohydrate binding type-21) domain profile PDOC51172 1 CBM3 (carbohydrate binding type-3) domain profile PDOC51969 1 CBM39 (carbohydrate binding type-39) domain profile PDOC52005 1 CBM56 (carbohydrate binding type-56) domain profile PDOC51175 1 CBM6 (carbohydrate binding type-6) domain profile PDOC51727 1 CBP/p300-type histone acetyltransferase (HAT) domain profile PDOC51371 1 CBS domain profile PDOC51017 1 CCT domain profile PDOC00321 1 CDP-alcohol phosphatidyltransferases signature PDOC00241 1 Cecropin family signature PDOC00016 1 Cell attachment sequence PDOC00352 1 Cell cycle proteins ftsW / rodA / spoVE signature PDOC51170 1 Cell wall-binding repeat profile PDOC51891 1 CENP-V/GFA domain profile PDOC51253 1 CENPB-type HTH domain profile PDOC00350 1 Cereal trypsin/alpha-amylase inhibitors family signature PDOC52012 1 CFEM domain profile PDOC51437 1 CG-1 DNA-binding domain profile PDOC51771 1 CGT/MARTX cysteine protease (CPD) domain profile PDOC51708 1 CHAD domain profile PDOC00403 1 Chalcone and stilbene synthases active site PDOC00249 1 Channel forming colicins signature PDOC50911 1 CHAP domain profile PDOC00679 2 Chaperonins clpA/B signatures PDOC00576 1 Chaperonins cpn10 signature PDOC00268 1 Chaperonins cpn60 signature PDOC00610 3 Chaperonins TCP-1 signatures PDOC51884 1 Chaplin domain profile PDOC50839 1 CHASE domain profile PDOC50122 1 CheB-type methylesterase domain profile PDOC50123 1 CheR-type methyltransferase profile PDOC50851 1 CheW-like domain profile PDOC00206 2 Chitin-binding type R&R domain signature and profile PDOC00025 2 Chitin-binding type-1 domain signature and profile PDOC50940 1 Chitin-binding type-2 domain profile PDOC00620 2 Chitinases family 19 signatures PDOC60000 1 Chitosanases families 46 and 80 active sites signature PDOC00093 1 Chloramphenicol acetyltransferase active site PDOC51401 1 CHORD domain profile PDOC51167 3 Chorismate mutase domains profiles PDOC00628 3 Chorismate synthase signatures PDOC50933 1 CHRD domain profile PDOC00517 2 Chromo domain signature and profile PDOC51391 1 CID domain profile PDOC51135 1 CIDE-N domain profile PDOC51721 1 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile PDOC00422 1 Citrate synthase signature PDOC50219 1 Citron homology (CNH) domain profile PDOC51508 1 CKK domain profile PDOC00891 1 Class A bacterial acid phosphatases signature PDOC51757 1 Class I myosin tail homology (TH1) domain profile PDOC51555 36 Class I SAM-dependent methyltransferases family profiles PDOC51604 3 Class IV SAM-dependent methyltransferases family profiles PDOC51565 17 Class V SAM-dependent methyltransferases family profiles PDOC51598 3 Class VI SAM-dependent methyltransferases family profiles PDOC00761 2 Clathrin adaptor complexes medium chain signatures PDOC00760 1 Clathrin adaptor complexes small chain signature PDOC50236 1 Clathrin heavy-chain (CHCR) repeat profile PDOC00196 2 Clathrin light chains signatures PDOC01045 1 Claudin family signature PDOC51888 1 Clip domain profile PDOC00416 1 Clostridium cellulosome enzymes repeated domain signature PDOC51903 1 Clp repeat (R) domain profile PDOC51902 1 ClpX zinc binding (ZB) domain profile PDOC51823 1 Clueless (Clu) domain profile PDOC00431 2 Clusterin signatures PDOC51846 1 CNNM transmembrane domain profile PDOC00988 3 Coagulation factors 5/8 type C domain (FA58C) signatures and profile PDOC51274 1 CobBQ-type GATase domain profile PDOC01044 1 COE family signature PDOC00980 2 Coenzyme A transferases signatures PDOC51808 1 Coiled coil-helix-coiled coil-helix (CHCH) domain profile PDOC00304 2 Cold-shock (CSD) domain profile PDOC00111 2 Colipase family signature and profile PDOC51403 1 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile PDOC52010 1 Collectrin-like domain profile PDOC51269 1 COMM domain profile PDOC60025 1 Conantokin family signature PDOC00341 2 Connexins signatures PDOC60004 5 Conotoxin families signatures PDOC60027 1 Contryphan family signature PDOC00895 2 Copper amine oxidase signatures PDOC00080 2 Copper type II, ascorbate-dependent monooxygenases signatures PDOC00863 2 Copper-fist DNA-binding domain signature and profile PDOC00082 2 Copper/Zinc superoxide dismutase signatures PDOC00783 1 Coproporphyrinogen III oxidase signature PDOC51900 1 Core-binding (CB) domain profile PDOC01042 1 Cornichon family signature PDOC51966 2 Coronavirus (CoV) 3a-like viroporin transmembrane (TM) and cytosolic (CD) domains profiles PDOC51952 1 Coronavirus (CoV) ExoN/MTase coactivator domain profile PDOC51954 1 Coronavirus (CoV) guanine-N7-methyltransferase (N7-MTase) domain profile PDOC51962 2 Coronavirus (CoV) Nsp1 globular and Betacoronavirus (BetaCoV) Nsp1 C-terminal domains profiles PDOC51960 1 Coronavirus (CoV) Nsp15 N-terminal oligomerization domain profile PDOC51989 3 Coronavirus (CoV) Nsp2 N-terminal, middle and C-terminal domains profiles PDOC51992 1 Coronavirus (CoV) Nsp3 Y domain profile PDOC51951 1 Coronavirus (CoV) Nsp9 ssRNA-binding domain profile PDOC51993 1 Coronavirus 3Ecto domain profile PDOC51926 1 Coronavirus envelope (CoV E) protein profile PDOC51442 1 Coronavirus main protease (M-pro) domain profile PDOC51927 1 Coronavirus membrane (CoV M) protein profile PDOC51948 4 Coronavirus Nsp12 Interface and RNA-dependent RNA polymerase (RdRp) and Nsp7 and Nsp8 cofactors domains profiles PDOC51943 2 Coronavirus Nsp3a and Nsp3d Ubl domains profiles PDOC51946 1 Coronavirus Nsp4 C-terminal (Nsp4C) domain profile PDOC51928 2 Coronavirus nucleocapsid (CoV N) protein N- and C-terminal (NTD and CTD) domains profiles PDOC51923 2 Coronavirus spike (S) glycoprotein S2 subunit heptad repeat 1 (HR1) and 2 (HR2) regions profiles PDOC51090 1 Cortactin repeat profile PDOC00442 1 Corticotropin-releasing factor family signature PDOC51262 1 COS domain profile PDOC51441 1 CpcD-like domain profile PDOC50191 1 CRAL-TRIO lipid binding domain profile PDOC51634 1 CRC domain profile PDOC52020 1 CRESS-DNA virus replication initiator protein (Rep) endonuclease domain profile PDOC50108 1 CRIB domain profile PDOC51290 1 CRIC domain profile PDOC00772 2 CRISP family signature PDOC01005 1 CRM domain profile PDOC50943 1 Cro/C1-type HTH domain profile PDOC01025 1 Crossover junction endodeoxyribonuclease ruvC signature PDOC00041 2 Crp-type HTH domain signature and profile PDOC51984 2 Cryptic Polo-Box 1 and 2 (CPB1 and CPB2) domains profiles PDOC00197 1 Crystallins beta and gamma 'Greek key' motif profile PDOC51203 1 CS domain profile PDOC51854 1 CSPG repeat profile PDOC00361 2 CTF/NF-I DNA-binding domain signature and profile PDOC00908 1 CUB domain profile PDOC51140 1 CUE domain profile PDOC00967 2 Cullin family signature and profile PDOC51788 1 CULT domain profile PDOC51042 1 CUT domain profile PDOC51983 1 CUT repeat-like (CUTL) domain profile PDOC00140 2 Cutinase active sites signatures PDOC51496 1 CVC domain profile PDOC51633 1 CXC domain profile PDOC00691 3 Cyclic nucleotide-binding domain signatures and profile PDOC00728 2 Cyclin-dependent kinases regulatory subunits signatures PDOC00264 1 Cyclins signature PDOC00154 2 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature & profile PDOC51052 3 Cyclotides profile and signatures PDOC00677 1 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site PDOC00259 1 Cysteine proteases inhibitors signature PDOC50203 1 Cysteine proteinase, calpain-type, catalytic domain profile PDOC00700 1 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site PDOC51289 1 Cysteine-rich GLG1 repeat PDOC51707 1 CYTH domain profile PDOC00702 2 Cytidine and deoxycytidylate deaminases zinc-binding region signature and domain profile PDOC00171 2 Cytochrome b/b6 profiles PDOC00170 2 Cytochrome b5 family, heme-binding domain signature and profile PDOC00464 1 Cytochrome b559 subunits heme-binding site signature PDOC50939 1 Cytochrome b561 domain profile PDOC00647 2 Cytochrome c and c1 heme lyases signatures PDOC00074 2 Cytochrome c oxidase subunit I signature and profile PDOC00075 3 Cytochrome c oxidase subunit II signature and profiles PDOC00663 2 Cytochrome c oxidase subunit Vb family signature and profile PDOC01032 1 Cytochrome c oxidase subunit VIa signature PDOC00081 1 Cytochrome P450 cysteine heme-iron ligand signature PDOC00548 1 Cytosol aminopeptidase signature PDOC00188 1 Cytosolic fatty-acid binding proteins signature PDOC00659 2 D-alanine--D-alanine ligase signatures PDOC00573 1 D-amino acid oxidases signature PDOC00063 3 D-isomer specific 2-hydroxyacid dehydrogenases signatures PDOC50146 1 DAG-kinase catalytic (DAGKc) domain profile PDOC50824 1 DAPIN domain profile PDOC51890 1 DAZ domain profile PDOC51376 1 DBB domain profile PDOC51413 1 DBINO domain profile PDOC00605 2 Dbl homology (DH) domain signature and profile PDOC51222 1 DCD domain profile PDOC51229 1 DCUN1 domain profile PDOC00329 1 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site PDOC51043 1 DDHD domain profile PDOC50827 1 DDT domain profile PDOC00039 2 DEAD and DEAH box families ATP-dependent helicases signatures PDOC51195 1 DEAD-box RNA helicase Q motif profile PDOC50017 1 Death domain profile PDOC50168 1 Death effector domain (DED) profile PDOC51482 1 DegV domain profile PDOC00285 2 Dehydrins signatures PDOC00788 1 Dehydroquinase class I active site PDOC00789 1 Dehydroquinase class II signature PDOC51998 1 DEK C-terminal (DEK-C) domain profile PDOC00451 1 Delta 1-pyrroline-5-carboxylate reductase signature PDOC00153 1 Delta-aminolevulinic acid dehydratase active site PDOC60018 1 Delta-atracotoxin (ACTX) family signature PDOC00696 2 DeoR-type HTH domain signature and profile PDOC00711 2 Deoxyribonuclease I signatures PDOC50186 1 DEP domain profile PDOC00996 1 Dephospho-CoA kinase (DPCK) domain profile PDOC51916 1 DEUBAD (DEUBiquitinase ADaptor) domain profile PDOC51512 3 DFDF domain and FFD and TFG boxes profiles PDOC51699 1 DG-type SEA domain profile PDOC51481 1 DhaK domain profile PDOC51480 1 DhaL domain profile PDOC50216 1 DHHC domain profile PDOC51794 1 Diadenylate cyclase (DAC) domain profile PDOC01029 1 Diaminopimelate epimerase signature PDOC51231 1 Diaphanous autoregulatory domain (DAD) profile PDOC51327 1 Dicer double-stranded RNA-binding fold domain profile PDOC01000 1 Dihydrodipicolinate reductase signature PDOC00569 2 Dihydrodipicolinate synthase signatures PDOC00072 2 Dihydrofolate reductase (DHFR) domain signature and profile PDOC00401 2 Dihydroorotase signatures PDOC00708 2 Dihydroorotate dehydrogenase signatures PDOC00630 2 Dihydropteroate synthase signatures PDOC00690 2 Dihydroxy-acid and 6-phosphogluconate dehydratases signatures PDOC51126 1 Dilute domain profile PDOC51825 1 DIPSY domain profile PDOC00351 2 Disintegrin domain signature and profile PDOC50841 1 DIX domain profile PDOC50809 2 DM DNA-binding domain signature and profile PDOC51336 1 DM10 domain profile PDOC51549 1 DM13 domain profile PDOC51912 1 DMAP1-binding domain profile PDOC52018 1 DNA ADP-ribosyl transferase (DarT) domain profile PDOC00057 1 DNA mismatch repair proteins mutL / hexB / PMS1 signature PDOC00388 1 DNA mismatch repair proteins mutS family signature PDOC00331 2 DNA photolyases class 1 signatures PDOC00832 2 DNA photolyases class 2 signatures PDOC00412 1 DNA polymerase family A signature PDOC00107 1 DNA polymerase family B signature PDOC00452 1 DNA polymerase family X signature PDOC00160 1 DNA topoisomerase II signature PDOC51737 1 DNA-binding recombinase domain profile PDOC00821 1 DNA/RNA non-specific endonucleases active site PDOC00771 1 DnaA protein signature PDOC51284 1 DOC domain profile PDOC51766 1 Dockerin domain profile PDOC51806 1 DOG1 domain profile PDOC50836 1 DOMON domain profile PDOC51569 1 DOT1 domain profile PDOC50137 1 Double stranded RNA-binding domain (dsRBD) profile PDOC50309 1 Doublecortin domain profile PDOC51074 1 DPH-type metal-binding (MB) domain profile PDOC00645 2 Dps protein family signatures PDOC51051 1 DSL domain profile PDOC50944 1 DtxR-type HTH domain profile PDOC51283 1 DUSP domain profile PDOC51282 1 DWNN domain profile PDOC00362 2 Dynamin-type guanine nucleotide-binding (G) domain signature and profile PDOC00953 1 Dynein light chain type 1 signature PDOC51404 1 DyP-type peroxidase family PDOC51703 1 DZF domain profile PDOC50883 1 EAL domain profile PDOC50912 1 EAR repeat profile PDOC51230 1 EB1-like C-terminal (EB1-C) domain profile PDOC00018 2 EF-hand calcium-binding domain signature and profile PDOC00021 3 EGF-like domain signatures and profile PDOC50031 1 EH domain profile PDOC00583 1 Electron transfer flavoprotein alpha-subunit signature PDOC00816 1 Electron transfer flavoprotein beta-subunit signature PDOC51213 1 ELK domain profile PDOC51156 1 ELM2 domain profile PDOC51335 1 ELMO domain profile PDOC00914 1 ELO family signature PDOC01001 1 Elongation factor 1 (EF-1) gamma C-terminal domain profile PDOC00648 2 Elongation factor 1 beta/beta'/delta chain signatures PDOC00981 1 Elongation factor P signature PDOC00867 2 Elongation factor Ts signatures PDOC51041 1 EMI domain profile PDOC51138 1 EMSY N-terminal (ENT) domain profile PDOC00964 1 Endogenous opioids neuropeptides precursors signature PDOC00615 2 Endonuclease III signatures PDOC00358 2 Endopeptidase Clp active sites PDOC00014 1 Endoplasmic reticulum targeting sequence PDOC00243 1 Endothelin family signature PDOC51712 1 EngA-type guanine nucleotide-binding (G) domain profile PDOC51706 1 EngB-type guanine nucleotide-binding (G) domain profile PDOC50936 1 EngC GTPase domain profile PDOC00992 1 Enhancer of rudimentary signature PDOC51665 1 Enkurin domain profile PDOC00148 1 Enolase signature PDOC00150 1 Enoyl-CoA hydratase/isomerase signature PDOC00582 2 Enterobacterial virulence outer membrane protein signatures PDOC50942 1 ENTH domain profile PDOC00699 2 Ependymins signatures PDOC51550 1 Eph receptor ligand binding (Eph LBD) domain profile PDOC01003 2 Ephrin receptor-binding (ephrin RBD) domain signature and profile PDOC00097 2 EPSP synthase signatures PDOC00732 2 ER lumen protein retaining receptor signatures PDOC51713 1 Era-type guanine nucleotide-binding (G) domain profile PDOC60026 1 Ergtoxin (ErgTx) family signature PDOC51324 1 ERV/ALR sulfhydryl oxidase domain profile PDOC00644 1 Erythropoietin / thrombopoeitin signature PDOC00374 3 Ets-domain signatures and profile PDOC00128 3 Eukaryotic and viral aspartyl proteases signature and profiles PDOC00428 1 Eukaryotic cobalamin-binding proteins signature PDOC00970 1 Eukaryotic initiation factor 1A signature PDOC00641 1 Eukaryotic initiation factor 4E signature PDOC00274 1 Eukaryotic initiation factor 5A hypusine signature PDOC00483 1 Eukaryotic mitochondrial porin signature PDOC00484 1 Eukaryotic molybdopterin oxidoreductases signature PDOC00106 1 Eukaryotic RNA polymerase II heptapeptide repeat PDOC00030 1 Eukaryotic RNA recognition motif profile PDOC00126 3 Eukaryotic thiol (cysteine) proteases active sites PDOC51959 1 Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile PDOC51933 1 EutK-Ctail domain profile PDOC51784 2 Exonuclease I (ExoI) SH3-like and C-terminal domains profiles PDOC50842 2 Expansin family profiles PDOC51751 1 EXPERA domain profile PDOC51380 1 EXS domain profile PDOC51805 1 Extended PHD (ePHD) domain profile PDOC00078 1 Extradiol ring-cleavage dioxygenases signature PDOC00609 2 F-actin capping protein alpha subunit signatures PDOC00203 1 F-actin capping protein beta subunit signature PDOC51741 1 F-BAR domain profile PDOC50181 1 F-box domain profile PDOC51114 1 F-box-associated (FBA) domain profile PDOC00753 2 FAD-dependent glycerol-3-phosphate dehydrogenase signatures PDOC50213 1 FAS1/BIgH3 domain profile PDOC51189 2 FAT and FATC domains profiles PDOC00399 2 Fatty acid desaturases signatures PDOC50969 1 FCP1 homology domain profile PDOC51471 1 Fe(2+) 2-oxoglutarate dioxygenase domain profile PDOC51191 1 FemABX peptidyl transferase family profile PDOC51711 1 FeoB-type guanine nucleotide-binding (G) domain profile PDOC00566 3 FERM domain signatures and profile PDOC51384 1 Ferredoxin reductase-type FAD-binding domain profile PDOC51447 1 Ferredoxin-fold anticodon binding (FDX-ACB) domain profile PDOC00181 2 Ferritin iron-binding regions signatures PDOC50905 1 Ferritin-like diiron domain profile PDOC00462 1 Ferrochelatase signature PDOC00966 4 Fetuin family signatures and fetuin-A- and fetuin-B-type cystatin domain profiles PDOC51676 1 FF domain domain profile PDOC51470 1 FG-GAP repeat profile PDOC00408 2 FGGY family of carbohydrate kinases signatures PDOC51461 1 Fibrillar collagen C-terminal non-collagenous (NC1) domain profile PDOC00489 1 Fibrillarin signature PDOC00445 2 Fibrinogen C-terminal domain signature and profile PDOC00965 2 Fibronectin type-I domain signature and profile PDOC00022 2 Fibronectin type-II collagen-binding domain signature and profile PDOC50853 1 Fibronectin type-III domain profile PDOC51459 1 Fido domain profile PDOC51830 1 FIIND domain profile PDOC50194 1 Filamin/ABP280 repeat profile PDOC51735 1 Filoviruses VP35 interferon inhibitory (IID) domain profile PDOC00886 1 Fimbrial biogenesis outer membrane usher protein signature PDOC51511 1 FIP-RBD domain profile PDOC00426 1 FKBP-type peptidyl-prolyl cis-trans isomerase profile PDOC00508 1 Flagella basal body rod proteins signature PDOC00812 2 Flagella transport protein fliP family signatures PDOC01011 1 Flagellar motor protein motA family signature PDOC00999 1 FLAP/GST2/LTC4S family signature PDOC51331 1 Flavin-dependent thymidylate synthase (thyX) domain profile PDOC51527 2 Flavivirus NS2B and NS3 protease (NS3pro) domain profiles PDOC00178 1 Flavodoxin signature PDOC50902 1 Flavodoxin-like domain profile PDOC51824 1 Flocculin 11 (Flo11) domain profile PDOC00482 2 FMN-dependent alpha-hydroxy acid dehydrogenase signature and profile PDOC51531 1 Foamy virus protease (FV PR) domain profile PDOC00773 2 Folylpolyglutamate synthase signatures PDOC00564 3 Fork head domain signatures and profile PDOC50006 1 Forkhead-associated (FHA) domain profile PDOC00956 3 Formamidopyrimidine-DNA glycosylase signature and profiles PDOC00769 2 Formate and nitrite transporters signatures PDOC00595 2 Formate--tetrahydrofolate ligase signatures PDOC51444 1 Formin homology-2 (FH2) domain profile PDOC01043 2 Frataxin family signature and profile PDOC50038 1 Frizzled (fz) domain profile PDOC00114 1 Fructose-1-6-bisphosphatase active site PDOC00143 1 Fructose-bisphosphate aldolase class-I active site PDOC00523 2 Fructose-bisphosphate aldolase class-II signatures PDOC50901 1 FtsK domain profile PDOC00873 2 FtsZ protein signatures PDOC00147 1 Fumarate lyases signature PDOC00393 1 Fumarate reductase / succinate dehydrogenase FAD-binding site PDOC00739 1 Fungal hydrophobins signature PDOC01014 1 FXYD family signature PDOC51542 2 FYR domain FYRN and FYRC motif profiles PDOC51882 1 G-alpha domain profile PDOC50174 1 G-patch domain profile PDOC00210 2 G-protein coupled receptors family 1 signature and profile PDOC00559 4 G-protein coupled receptors family 2 signatures and profiles PDOC00754 4 G-protein coupled receptors family 3 signatures and profile PDOC01002 1 G-protein gamma subunit profile PDOC00765 2 G10 protein signatures PDOC51109 1 G5 domain profile PDOC51484 1 G8 domain profile PDOC00099 1 Galactokinase signature PDOC00108 2 Galactose-1-phosphate uridyl transferase signatures PDOC00279 1 Galactoside-binding lectin (galectin) domain profile PDOC00673 1 Galanin signature PDOC50180 1 Gamma-adaptin ear (GAE) domain profile PDOC00011 2 Gamma-carboxyglutamic acid-rich (Gla) domain signature and profile PDOC51275 1 Gamma-glutamyl hydrolase domain profile PDOC00940 1 Gamma-glutamyl phosphate reductase signature PDOC00404 1 Gamma-glutamyltranspeptidase signature PDOC00725 1 Gamma-thionins family signature PDOC51460 1 GAR domain profile PDOC00207 2 Gas vesicles protein GVPa signatures PDOC00208 1 Gas vesicles protein GVPc repeated domain signature PDOC00232 1 Gastrin / cholecystokinin family signature PDOC50909 1 GAT domain profile PDOC00300 2 GATA-type zinc finger domain signature and profile PDOC51715 1 GB1/RHD3-type guanine nucleotide-binding (G) domain profile PDOC51069 1 GBP repeat profile PDOC50807 1 GCM domain profile PDOC51186 4 Gcn5-related N-acetyltransferase (GNAT) domain profiles PDOC00952 1 GDA1/CD39 family of nucleoside phosphatases signature PDOC51388 1 GED domain profile PDOC00498 1 General diffusion Gram-negative porins signature PDOC00597 1 Germin family signature PDOC52031 1 GG-type lectin domain profile PDOC50887 1 GGDEF domain profile PDOC00545 1 GHMP kinases putative ATP-binding domain PDOC51867 1 Gid-type RING finger profile PDOC50164 1 GIY-YIG domain profile PDOC00793 2 Globin family and Androglobin (Adgb) circularly permuted globin domain profiles PDOC00726 1 glpT family of transporters signature PDOC00071 1 Glu / Leu / Phe / Val dehydrogenases active site PDOC00233 1 Glucagon / GIP / secretin / VIP family signature PDOC00646 1 Glucoamylase active site region signature PDOC00979 1 Glucokinase regulatory protein family signature PDOC00894 1 Glucosamine/galactosamine-6-phosphate isomerases signature PDOC00986 2 Glucose inhibited division protein A family signatures PDOC00067 1 Glucose-6-phosphate dehydrogenase active site PDOC00157 3 Glucose-6-phosphate isomerase (GPI) family signatures and profile PDOC51495 1 GLUE domain profile PDOC00701 1 Glutamate 5-kinase signature PDOC60031 1 Glutamic acid-rich protein 2 (GARP2) signature PDOC00405 1 Glutamine amidotransferase type 1 domain profile PDOC00406 1 Glutamine amidotransferase type 2 domain profile PDOC51986 2 Glutamine synthetase (GS) beta-grasp and catalytic domains profiles PDOC00162 3 Glutamine synthetase signatures PDOC00608 1 Glutamyl-tRNA reductase signature PDOC00948 1 Glutamyl-tRNA(Gln) amidotransferase subunit B signature PDOC00173 2 Glutaredoxin active site signature and domain profile PDOC00396 3 Glutathione peroxidases signatures and profile PDOC00069 1 Glyceraldehyde 3-phosphate dehydrogenase active site PDOC00665 2 Glycine radical domain signature and profile PDOC00281 1 Glycophorin A signature PDOC00779 1 Glycoprotease family signature PDOC00623 3 Glycoprotein hormones alpha chain signatures and profile PDOC00234 2 Glycoprotein hormones beta chain signatures PDOC00495 2 Glycosyl hydrolases family 1 signatures PDOC00510 2 Glycosyl hydrolases family 10 (GH10) active site and domain profile PDOC00622 3 Glycosyl hydrolases family 11 (GH11) active sites signatures and domain profile PDOC00794 2 Glycosyl hydrolases family 16 (GH16) signature and domain profile PDOC00507 1 Glycosyl hydrolases family 17 signature PDOC00839 2 Glycosyl hydrolases family 18 (GH18) active site signature and domain profile PDOC00531 2 Glycosyl hydrolases family 2 signatures PDOC00119 2 Glycosyl hydrolases family 22 (GH22) domain signature and profile PDOC00737 2 Glycosyl hydrolases family 25 (GH25) active site signature and domain profile PDOC51764 1 Glycosyl hydrolases family 26 (GH26) domain profile PDOC00621 1 Glycosyl hydrolases family 3 active site PDOC00120 2 Glycosyl hydrolases family 31 signatures PDOC00532 1 Glycosyl hydrolases family 32 active site PDOC00910 1 Glycosyl hydrolases family 35 putative active site PDOC00787 1 Glycosyl hydrolases family 39 putative active site PDOC01027 1 Glycosyl hydrolases family 4 signature PDOC00877 1 Glycosyl hydrolases family 45 active site PDOC00565 1 Glycosyl hydrolases family 5 signature PDOC00563 2 Glycosyl hydrolases family 6 signatures PDOC52006 1 Glycosyl hydrolases family 64 (GH64) domain profile PDOC00640 1 Glycosyl hydrolases family 8 signature PDOC52008 1 Glycosyl hydrolases family 81 (GH81) domain profile PDOC52009 1 Glycosyl hydrolases family 84 (GH84) domain profile PDOC00511 3 Glycosyl hydrolases family 9 (GH9) active sites signatures PDOC51659 1 Glycosyltransferase family 23 (GT23) domain profile PDOC00720 2 Glyoxalase I signatures PDOC00927 1 Glypicans signature PDOC00543 2 GMC oxidoreductases signatures PDOC51553 1 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile PDOC51473 1 Gnk2-homologous domain profile PDOC00042 1 GntR-type HTH domain profile PDOC50866 1 GOLD domain profile PDOC50877 1 GoLoco/GPR motif profile PDOC51046 1 GON domain profile PDOC00432 1 Gonadotropin-releasing hormones signature PDOC51704 1 GP-PDE domain profile PDOC00890 1 GPR1/FUN34/yaaH family signature PDOC50221 1 GPS domain profile PDOC00552 1 Gram-negative pili assembly chaperone signature PDOC00373 1 Gram-positive cocci surface proteins LPxTG motif profile PDOC00365 2 Granins signatures PDOC00634 1 Granulins signature PDOC00584 1 Granulocyte-macrophage colony-stimulating factor signature PDOC50985 1 GRAS domain profile PDOC51865 1 GRASP-type PDZ domain profile PDOC51968 1 Grh/CP2 DNA-binding (DB) domain profile PDOC50913 1 GRIP domain profile PDOC00822 1 grpE protein signature PDOC51256 1 GS domain profile PDOC51775 1 GTD-binding domain profile PDOC51139 1 GTF2I-like repeat profile PDOC00672 2 GTP cyclohydrolase I signatures PDOC00704 1 GTP1/OBG family signature PDOC00425 2 Guanylate cyclase domain signature and profile PDOC00670 2 Guanylate kinase-like signature and profile PDOC51780 1 GW domain profile PDOC50829 1 GYF domain profile PDOC50885 1 HAMP domain profile PDOC51913 1 HARE-type HTH domain profile PDOC51467 1 HARP domain profile PDOC00220 1 HBGF/FGF family signature PDOC51753 1 HBM domain profile PDOC00292 1 HCP repeats signature PDOC51643 1 HD Cas3-type domain profile PDOC51831 3 HD, HD-GYP and HD-related output (HDOD) domains profiles PDOC51089 1 Headpiece (HP) domain profile PDOC50077 1 HEAT repeat profile PDOC00269 3 Heat shock hsp70 proteins family signatures PDOC00270 1 Heat shock hsp90 proteins family signature PDOC00246 1 Heat-stable enterotoxins signature PDOC00804 2 Heavy-metal-associated domain signature and profile PDOC50237 1 HECT domain profile PDOC51744 1 Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain profile PDOC51405 1 Heme haloperoxidase family profile PDOC00512 1 Heme oxygenase signature PDOC00394 4 Heme peroxidase signatures and profiles PDOC50253 1 Heme-copper oxidase subunit III profile PDOC00476 1 Hemerythrin family signature PDOC00293 1 Hemolysin-type calcium-binding region signature PDOC00023 2 Hemopexin domain signature and hemopexin repeat profile PDOC51693 1 Hepacivirus nonstructural protein 2 (NS2) protease domain profile PDOC51822 1 Hepacivirus/Pegivirus NS3 protease domain profile PDOC51838 1 Hepatitis delta antigen (HDAg) domain profile PDOC50910 1 HEPN domain profile PDOC51988 1 Herpesviridae UL32 packaging protein family profile PDOC51521 1 Herpesvirus tegument ubiquitin-specific protease (htUSP) domain profile PDOC00094 1 Hexapeptide-repeat containing-transferases signature PDOC00370 2 Hexokinase domain signature and profile PDOC51705 1 HflX-type guanine nucleotide-binding (G) domain profile PDOC51503 1 HIG1 domain profile PDOC00515 1 High potential iron-sulfur proteins family profile PDOC50834 1 HIN-200 A and B domains profile PDOC51839 1 His(Cys)3-ligated-type [4Fe-4S] domain profile PDOC00538 2 Histidine acid phosphatases signatures PDOC50109 1 Histidine kinase domain profile PDOC50894 1 Histidine-containing phosphotransfer (HPt) domain profile PDOC00534 1 Histidinol dehydrogenase signature PDOC00045 1 Histone H2A signature PDOC00308 1 Histone H2B signature PDOC00287 2 Histone H3 signatures PDOC00046 1 Histone H4 signature PDOC00694 2 HIT domain signature and profile PDOC00469 1 HlyD family secretion proteins signature PDOC00305 2 HMG boxes A and B DNA-binding domains signature and profile PDOC00306 1 HMG-I and HMG-Y DNA-binding domain (A+T-hook) PDOC00307 1 HMG14 and HMG17 signature PDOC51937 1 HNF-1 dimerization (HNF-p1) domain profile PDOC00481 1 Hok/gef family cell toxic proteins signature PDOC51818 1 Homeo-Prospero (HPD) domain profile PDOC00032 1 'Homeobox' antennapedia-type protein signature PDOC00027 2 'Homeobox' domain signature and profile PDOC00033 1 'Homeobox' engrailed-type protein signature PDOC50970 1 Homocysteine-binding domain profile PDOC00800 1 Homoserine dehydrogenase signature PDOC50815 1 HORMA domain profile PDOC51770 1 HotDog acyl-CoA thioesterase (ACOT)-type domain profile PDOC50967 1 HRDC domain profile PDOC51204 1 HSA domain profile PDOC51791 1 hSac2 domain profile PDOC00381 1 HSF-type DNA-binding domain signature PDOC51414 1 HSR domain profile PDOC60021 1 Huwentoxin-1 family signature PDOC60022 1 Huwentoxin-2 family signature PDOC51118 1 HxlR-type HTH domain profile PDOC00841 1 Hydrogenases expression/synthesis hupF/hypC family signature PDOC00962 1 Hydrogenases expression/synthesis hypA family signature PDOC00813 1 Hydroxymethylglutaryl-coenzyme A lyase active site PDOC00064 4 Hydroxymethylglutaryl-coenzyme A reductase signatures and profile PDOC00942 1 Hydroxymethylglutaryl-coenzyme A synthase active site PDOC00944 2 Hypothetical cof family signatures PDOC00887 1 Hypothetical hesB/yadR/yfhF family signature PDOC51875 2 Hypovirulence-associated virus (HAV) papain-like proteases p29 and p48 domains profiles PDOC50825 1 HYR domain profile PDOC50945 1 I/LWEQ domain profile PDOC51214 1 IBB domain profile PDOC00807 2 IclR-type HTH and iclR effector binding domains profiles PDOC50835 1 Ig-like domain profile PDOC51338 1 IMD domain profile PDOC00738 2 Imidazoleglycerol-phosphate dehydratase signatures PDOC00262 1 Immunoglobulins and major histocompatibility complex proteins signature PDOC00391 1 IMP dehydrogenase / GMP reductase signature PDOC50166 1 Importin-beta N-terminal domain profile PDOC00536 1 Indole-3-glycerol phosphate synthase signature PDOC00684 2 Indoleamine 2,3-dioxygenase signatures PDOC00905 1 Initiation factor 2 signature PDOC00723 1 Initiation factor 3 signature PDOC00325 1 Inorganic pyrophosphatase signature PDOC00960 1 Inosine-uridine preferring nucleoside hydrolase family signature PDOC00547 2 Inositol monophosphatase family signatures PDOC00235 1 Insulin family signature PDOC00194 2 Insulin-like growth factor binding protein (IGFBP) N-terminal domain signature and profile PDOC00130 1 Insulinase family, zinc-binding region signature PDOC50994 1 Integrase catalytic domain profile PDOC51027 1 Integrase DNA binding domain profile PDOC00215 1 Integrins alpha chain signature PDOC00216 1 Integrins beta chain cysteine-rich domain signature PDOC50819 1 Intein DOD-type homing endonuclease domain profile PDOC00687 2 Intein N- and C-terminal splicing motif profiles PDOC00225 1 Interferon alpha, beta and delta family signature PDOC00226 1 Interleukin-1 signature PDOC00450 1 Interleukin-10 family signature PDOC00349 1 Interleukin-2 signature PDOC00227 1 Interleukin-6 / G-CSF / MGF family signature PDOC00228 1 Interleukin-7 and -9 signature PDOC00655 1 Interleukins -4 and -13 signature PDOC00198 2 Intermediate filament (IF) rod domain signature and profile PDOC00079 1 Intradiol ring-cleavage dioxygenases signature PDOC51688 1 Intramolecular chaperone auto-processing (ICA) domain profile PDOC51909 1 Invertebrate (I)-type lysozyme domain profile PDOC00356 1 Invertebrate defensins family profile PDOC00632 1 Involucrin signature PDOC00925 1 Iodothyronine deiodinases active site PDOC50096 1 IQ motif profile PDOC00522 2 IRF tryptophan pentad repeat DNA-binding domain signature and profile PDOC51716 1 IRG-type guanine nucleotide-binding (G) domain profile PDOC50983 1 Iron siderophore/cobalamin periplasmic-binding domain profile PDOC00059 2 Iron-containing alcohol dehydrogenases signatures PDOC51064 1 IRS-type phosphotyrosine binding domain (PTB) profile PDOC50531 2 IS21/IS408 transposase-types HTH domains profiles PDOC00389 1 Isocitrate and isopropylmalate dehydrogenases signature PDOC00145 1 Isocitrate lyase signature PDOC00165 2 Isopenicillin N synthase signatures PDOC51055 2 ITAM motif profiles PDOC00553 3 J-protein family domains signature and profiles PDOC51752 1 Jacalin-type lectin domain profile PDOC60020 1 Janus-faced atracotoxin (J-ACTX) family signature PDOC51183 2 JmjN and JmjC domains profiles PDOC50957 1 Josephin domain profile PDOC51297 1 K-box domain profile PDOC51430 2 KaiA N- and C-terminal domain profiles PDOC51146 1 KaiC domain profile PDOC51850 2 KARI N- and C-terminal domains profiles PDOC51049 1 KASH domain profile PDOC00254 2 Kazal serine protease inhibitors family signature and profile PDOC51488 1 KBD domain profile PDOC00144 2 KDPG and KHG aldolases active site signatures PDOC51392 1 KEN domain profile PDOC00529 2 Ketosynthase family 3 (KS3) active signature and domain profile PDOC50084 2 KH domain profiles PDOC51490 1 KHA domain profile PDOC50953 1 KID domain profile PDOC51301 1 KilA-N domain profile PDOC50032 1 Kinase associated domain 1 (KA1) profile PDOC51377 1 KIND domain profile PDOC00893 1 Kinesin light chain repeat PDOC00343 2 Kinesin motor domain signature and profile PDOC51647 1 Kininogen-type cystatin domain profile PDOC50952 1 KIX domain profile PDOC50806 1 KRAB-related domain profile PDOC00020 2 Kringle domain signature and profile PDOC50805 1 Krueppel-associated box (KRAB) profile PDOC52029 1 L,D-transpeptidase (L,D-TPase) catalytic domain profile PDOC00062 1 L-lactate dehydrogenase active site PDOC51328 1 L-type lectin-like (leguminous) domain profile PDOC51022 1 L27 domain profile PDOC50961 1 La-type HTH domain profile PDOC00366 2 LacI-type HTH domain signature and profile PDOC00698 2 LacY family proton/sugar symporters signatures PDOC00478 1 Lambdoid phages regulatory protein CIII signature PDOC51841 1 Lamin-tail (LTD) domain profile PDOC50025 1 Laminin G domain profile PDOC51115 2 Laminin IV domain profiles PDOC51117 1 Laminin N-terminal (LN) domain profile PDOC00961 2 Laminin-type EGF-like (LE) domain signature and profile PDOC51287 1 Large T-antigen (T-ag) origin-binding domain (OBD) profile PDOC01030 1 Large-conductance mechanosensitive channels mscL family signature PDOC52033 1 Latexin (LXN)-type cystatin domain profile PDOC00367 1 LBP / BPI / CETP family signature PDOC50820 1 LCCL domain profile PDOC51863 1 LCN-type cysteine-stabilized alpha/beta (CS-alpha/beta) domain profile PDOC00929 2 LDL-receptor class A (LDLRA) domain signature and profile PDOC51120 1 LDL-receptor class B (LDLRB) repeat profile PDOC50231 1 Lectin domain of ricin B chain profile PDOC00278 2 Legume lectins signatures PDOC50954 2 LEM and LEM-like domain profiles PDOC51758 1 Letm1 ribosome-binding (RBD) domain profile PDOC51450 1 Leucine rich repeat profile PDOC00029 1 Leucine zipper pattern PDOC00509 1 LIF / OSM family signature PDOC51957 1 LIM interaction domain (LID) domain profile PDOC00382 2 LIM zinc-binding domain signature and profile PDOC00955 2 Link domain signature and profile PDOC51504 1 Linker histone H1/H5 globular (H15) domain profile PDOC00110 1 Lipases, serine active site PDOC00187 1 Lipocalin signature PDOC00842 1 Lipolytic enzymes "G-D-S-L" family, serine active site PDOC00903 2 Lipolytic enzymes "G-D-X-G" family, putative active sites signatures PDOC00077 3 Lipoxygenase iron-binding catalytic domain signatures and profile PDOC50896 2 LIS1 homology (LisH) motif and C-terminal to LisH (CTLH) motif profiles PDOC51837 1 LITAF domain profile PDOC50258 1 LNR (Lin-12/Notch) repeat profile PDOC50891 1 LOB domain profile PDOC51787 1 Lon N-terminal domain profile PDOC51786 1 Lon proteolytic domain profile PDOC01051 1 Long hematopoietin receptor, gp130 family signature PDOC01050 1 Long hematopoietin receptor, single chain family signature PDOC01052 1 Long hematopoietin receptor, soluble alpha chains family signature PDOC50859 1 Longin domain profile PDOC51934 1 LRAT domain profile PDOC00542 2 LuxR-type HTH domain signature and profile PDOC51756 1 LXG domain profile PDOC00756 1 Ly-6 / u-PAR domain signature PDOC51782 1 LysM domain profile PDOC00280 3 Lysosome-associated membrane glycoprotein family signatures and profile PDOC00043 1 LysR-type HTH domain profile PDOC01028 1 Lysyl hydroxylase signature PDOC00716 1 Lysyl oxidase putative copper-binding region signature PDOC50930 1 LytTR-type HTH domain profile PDOC51498 1 MABP domain profile PDOC51154 1 Macro domain profile PDOC00892 1 Macrophage migration inhibitory factor family signature PDOC51075 2 MAD homology domains MH1 and MH2 profiles PDOC51029 1 MADF domain profile PDOC00302 2 MADS-box domain signature and profile PDOC50838 1 MAGE conserved domain profile PDOC50850 1 Major facilitator superfamily (MFS) profile PDOC50202 1 Major sperm protein (MSP) domain profile PDOC00066 1 Malate dehydrogenase active site signature PDOC00441 1 Malate synthase signature PDOC00294 1 Malic enzymes signature PDOC00604 2 MAM domain signature and profile PDOC00242 1 Mammalian defensins signature PDOC00706 2 Mandelate racemase / muconate lactonizing enzyme family signatures PDOC00083 1 Manganese and iron superoxide dismutases signature PDOC00751 1 Mannitol dehydrogenases signature PDOC50986 1 MANSC domain profile PDOC01049 1 MAP kinase signature PDOC51223 1 MAP repeat profile PDOC00649 2 MARCKS family signatures PDOC52032 1 MarR-like, BRCT and chromo domains module profile PDOC00861 2 MarR-type HTH domain signature and profile PDOC51225 1 MARVEL domain profile PDOC50144 1 MATH/TRAF domain profile PDOC00472 1 Matrixins cysteine switch PDOC51079 1 MBT repeat profile PDOC00662 2 MCM family signature and profile PDOC00251 2 Membrane attack complex/perforin (MACPF) domain signature and profile PDOC51439 1 MENTAL domain profile PDOC00477 2 MerR-type HTH domain signature and profile PDOC00575 2 Methionine aminopeptidase signatures PDOC51790 1 Methionine-R-sulfoxide reductase (MsrB) domain profile PDOC50982 1 Methyl-CpG-binding domain (MBD) profile PDOC00320 1 Methylated-DNA--protein-cysteine methyltransferase active site PDOC01037 1 Methylglyoxal synthase active site PDOC00470 1 Methylmalonyl-CoA mutase signature PDOC00984 2 Methylthiotransferase domain signature and profile PDOC51855 1 MGS-like domain profile PDOC50924 1 MHYT domain profile PDOC51366 1 MI domain profile PDOC51416 1 MIB/HERC2 domain profile PDOC00299 1 Microbodies C-terminal targeting signal PDOC00193 1 MIP family signature PDOC50919 1 MIR domain profile PDOC51793 1 Mis18 domain profile PDOC01009 1 moaA / nifB / pqqE family signature PDOC00828 2 Molybdenum cofactor biosynthesis proteins signatures PDOC51866 1 Mop domain profile PDOC51340 1 MOSC domain profile PDOC50249 1 MPN domain profile PDOC01046 2 MraY family signatures PDOC51640 1 MRG domain profile PDOC51914 1 MRH domain profile PDOC51562 1 mRNA cap 0 methyltransferase domain profile PDOC00935 1 Mrp family signature PDOC51796 1 MSS4 domain profile PDOC51143 1 MT-A70-like family profile PDOC51072 1 Mu homology domain (MHD) profile PDOC60015 1 Mu-agatoxin family signature PDOC51702 1 Mu-type HTH domain profile PDOC00076 2 Multicopper oxidases signatures PDOC51258 2 Munc13-homology domains 1 and 2 (MHD1 and MHD2) profiles PDOC51224 1 MVP (vault) repeat profile PDOC00037 2 Myb-type HTH DNA-binding domain profiles PDOC00038 1 Myc-type, basic helix-loop-helix (bHLH) domain profile PDOC00492 1 Myelin basic protein signature PDOC00491 1 Myelin P0 protein signature PDOC00497 2 Myelin proteolipid protein signatures PDOC51456 1 Myosin motor domain profile PDOC51844 1 Myosin N-terminal SH3-like domain profile PDOC00435 2 Myotoxins family signature and profile PDOC51339 1 Myotubularin phosphatase domain PDOC00752 2 Myristoyl-CoA:protein N-myristoyltransferase signatures PDOC51726 1 MYST-type histone acetyltransferase (HAT) domain profile PDOC51016 1 MyTH4 domain profile PDOC00088 1 N-4 cytosine-specific DNA methylases signature PDOC00087 1 N-6 Adenine-specific DNA methylases signature PDOC00941 1 N-acetyl-gamma-glutamyl-phosphate reductase active site PDOC00001 1 N-glycosylation site PDOC00008 1 N-myristoylation site PDOC51151 1 NAC A/B domain profile PDOC51005 1 NAC domain profile PDOC50837 1 NACHT-NTPase domain profile PDOC00809 2 NAD-dependent DNA ligase signatures PDOC00740 1 NAD-dependent glycerol-3-phosphate dehydrogenase signature PDOC00993 1 NAD:arginine ADP-ribosyltransferase signature PDOC51300 1 NADH-nitrite reductase subunit D family profile PDOC50816 1 NAF domain profile PDOC00430 1 Natriuretic peptides receptors signature PDOC00236 1 Natriuretic peptides signature PDOC51487 1 NBD domain profile PDOC51517 1 NDT80 DNA-binding domain profile PDOC50978 1 NEAT domain profile PDOC51216 1 Nebulin repeat profile PDOC51885 1 Neprilysin-like (M13) protease domain profile PDOC50965 1 NERD domain profile PDOC00221 2 Nerve growth factor family signature and profile PDOC51525 1 NET domain profile PDOC51774 1 Networked (NET) actin-binding (NAB) domain profile PDOC51065 1 Neuralized homology repeat (NHR) domain profile PDOC00202 1 Neuraxin and MAP1B proteins repeated region signature PDOC00237 1 Neurohypophysial hormones signature PDOC00747 1 Neuromedin U signature PDOC00344 2 Neuromodulin (GAP-43) signatures PDOC00209 1 Neurotransmitter-gated ion-channels signature PDOC00129 1 Neutral zinc metallopeptidases, zinc-binding region signature PDOC00924 2 NF-kappa-B/Rel/dorsal domain signature and profile PDOC00578 3 NF-Y/HAP subunits signatures and profile PDOC51125 1 NHL repeat profile PDOC00688 2 Nickel-dependent hydrogenases b-type cytochrome subunit signatures PDOC00400 2 Nickel-dependent hydrogenases large subunit signatures PDOC51142 1 Nicotianamine synthase (NAS)-like family profile PDOC51220 1 NIDO domain profile PDOC50993 1 Nidogen G2 beta-barrel domain profile PDOC51958 1 Nidoviral uridylate-specific endoribonuclease (NendoU) domain profile PDOC51955 1 Nidovirus 2'-O-methyltransferase (2'-O-MTase) domain profile PDOC51953 1 Nidovirus 3'-5' exoribonuclease (ExoN) domain profile PDOC51947 1 Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domain profile PDOC51652 2 Nidoviruses zinc-binding (ZBD) domain profiles PDOC00580 3 NifH/frxC family signatures and profile PDOC50906 1 Nitrate and nitrite sensing (NIT) domain profile PDOC60001 1 Nitric oxide synthase (NOS) signature PDOC00712 2 Nitrilases / cyanide hydratase signatures PDOC00314 1 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site PDOC00085 2 Nitrogenases component 1 alpha and beta subunits signatures PDOC51935 1 NlpC/P60 domain profile PDOC00844 1 NNMT/PNMT/TEMT family of methyltransferases signature PDOC51677 1 NodB homology domain profile PDOC01047 1 Nodulation protein nodA signature PDOC00888 1 NOL1/NOP2/sun family signature PDOC51358 1 Nop domain profile PDOC51537 1 Norovirus 3C-like protease (NV 3CLpro) domain profile PDOC51649 1 NPH3 domain profile PDOC51121 1 NtA (N-terminal agrin) domain profile PDOC50189 1 NTR domain profile PDOC00031 2 Nuclear hormone receptors DNA-binding domain signature and profile PDOC51843 1 Nuclear receptor (NR) ligand-binding (LBD) domain profile PDOC00467 1 Nuclear transition protein 1 signature PDOC00749 2 Nuclear transition protein 2 signatures PDOC50177 1 Nuclear transport factor 2 domain profile PDOC00409 2 Nucleoside diphosphate kinase (NDPK) active site signature and NDPK-like domain profile PDOC00695 3 Nudix hydrolase domain signatures and profile PDOC51434 1 NUP C-terminal domain profile PDOC50803 1 OAR domain profile PDOC51881 1 Obg C-terminal (OCT) domain profile PDOC51883 1 Obg domain profile PDOC51710 1 OBG-type guanine nucleotide-binding (G) domain profile PDOC52003 1 OCA domain profile PDOC51980 1 Occludin/ELL (OCEL) domain profile PDOC01017 1 Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase (lipB) signature PDOC51316 1 Olduvai (ODV) domain profile PDOC00639 1 Oleosins signature PDOC51132 1 Olfactomedin-like domain profile PDOC60023 1 Omega-agatoxin type II and III signature PDOC60016 2 Omega-atracotoxin (ACTX) families signatures PDOC00819 2 OmpA-like domain signature and profile PDOC51755 1 OmpR/PhoB-type DNA-binding domain profile PDOC51773 1 Orange carotenoid protein (OCP) N-terminal domain profile PDOC51054 1 Orange domain profile PDOC00685 2 Orn/DAP/Arg decarboxylases family 2 signatures PDOC00585 1 Orn/Lys/Arg decarboxylases family 1 pyridoxal-phosphate attachment site PDOC01039 1 Ornithine decarboxylase antizyme signature PDOC00141 1 Orotidine 5'-phosphate decarboxylase active site PDOC51644 1 OST-type HTH domain profile PDOC00535 2 Osteonectin domain signatures PDOC00689 1 Osteopontin signature PDOC50802 1 OTU domain profile PDOC51754 1 OVATE domain profile PDOC00674 1 Oxygen oxidoreductases covalent FAD-binding site PDOC00774 1 Oxysterol-binding protein family signature PDOC51861 1 Oxytoxin-type inhibitor cystine knot (ICK) domain profile PDOC00439 3 P-II protein family signatures and profile PDOC00024 2 P-type ('Trefoil') domain signature and profile PDOC00139 1 P-type ATPases phosphorylation site PDOC51829 1 P/Homo B domain profile PDOC00301 1 p53 family signature PDOC51820 1 PA14 domain profile PDOC51446 1 Pacifastin domain profile PDOC52007 1 PADR1 zinc-binding domain profile PDOC51477 1 PAH domain profile PDOC00034 2 Paired DNA-binding domain signature and profile PDOC00376 2 PAN/apple domain signature and profile PDOC00238 2 Pancreatic hormone family signature and profile PDOC00118 1 Pancreatic ribonuclease family signature PDOC00252 2 Pancreatic trypsin inhibitor (Kunitz) family signature and profile PDOC51013 1 Pannexin family profile PDOC00296 1 Parathyroid hormone family signature PDOC51059 2 PARP catalytic and alpha-helical domains profiles PDOC52022 1 Parvovirus (PV) NS1 nuclease (NS1-Nuc) domain profile PDOC50112 2 PAS repeat and PAC domain profiles PDOC51178 1 PASTA domain profile PDOC51635 1 Patatin-like phospholipase (PNPLA) domain profile PDOC00437 1 Pathogenesis-related proteins Bet v I family signature PDOC51398 1 PAW domain profile PDOC50821 1 PAZ domain profile PDOC51745 1 PB1 domain profile PDOC51978 1 PBC domain profile PDOC50250 1 PCI domain profile PDOC51387 1 PCMH-type FAD-binding domain profile PDOC00949 2 PdxS/SNZ family signature and profile PDOC00950 2 PdxT/SNO family signature and profile PDOC50106 1 PDZ domain profile PDOC00413 2 Pectinesterase signatures PDOC51375 1 Pentatricopeptide (PPR) repeat profile PDOC00261 2 Pentraxin (PTX) domain signature and profile PDOC00527 2 PEP-utilizing enzymes signatures PDOC51817 1 Peptidase family A3B domain profile PDOC51124 1 Peptidase family C16 domain profile PDOC51738 1 Peptidase family C21 domain profile PDOC51492 1 Peptidase family C23 domain profile PDOC50990 1 Peptidase family C39 domain profile PDOC52035 1 Peptidase family M14 domain profile PDOC52011 1 Peptidase family M2 domain profile PDOC52034 1 Peptidase family M32 domain profile PDOC51723 1 Peptidase family M60 domain profile PDOC51694 1 Peptidase family M66 domain profile PDOC51868 1 Peptidase family S39 domain profile PDOC51691 1 Peptidase family S6 domain profile PDOC00982 1 Peptidase family U32 signature PDOC00920 2 Peptidyl-tRNA hydrolase signatures PDOC51826 1 Peripheral subunit-binding (PSBD) domain profile PDOC00719 1 Peripherin / rom-1 signature PDOC51876 1 Pestivirus N-terminal protease (Npro) domain profile PDOC51692 1 Pestivirus nonstructural protein 2 (NS2) protease domain profile PDOC51535 1 Pestivirus NS3 protease (NS3pro) domain profile PDOC51303 1 PET domain profile PDOC00504 2 pfkB family of carbohydrate kinases signatures PDOC51276 1 PfpI endopeptidase domain profile PDOC51394 1 PFU domain profile PDOC51852 2 pG1 and pG2 pseudoGTPase domains profiles PDOC50003 1 PH domain profile PDOC00424 1 Phenylalanine and histidine ammonia-lyases active site PDOC00103 3 Phosphagen kinase active site signature and N- and C-terminal domain profiles PDOC01019 1 Phosphatidate cytidylyltransferase signature PDOC00938 1 Phosphatidylethanolamine-binding protein family signature PDOC00710 3 Phosphatidylinositol 3- and 4-kinases catalytic domain signatures and profile PDOC51544 1 Phosphatidylinositol 3-kinase adaptor-binding (PI3K ABD) domain profile PDOC51546 1 Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profiles PDOC51545 1 Phosphatidylinositol kinase (PIK) helical domain profile PDOC51455 1 Phosphatidylinositol phosphate kinase (PIPK) domain profile PDOC50007 2 Phosphatidylinositol-specific phospholipase C profiles PDOC00460 1 Phosphoenolpyruvate carboxykinase (ATP) signature PDOC00421 1 Phosphoenolpyruvate carboxykinase (GTP) signature PDOC00330 2 Phosphoenolpyruvate carboxylase active sites PDOC00336 1 Phosphofructokinase signature PDOC00589 1 Phosphoglucomutase and phosphomannomutase phosphoserine signature PDOC00102 1 Phosphoglycerate kinase signature PDOC00158 1 Phosphoglycerate mutase family phosphohistidine signature PDOC60002 2 Phosphoketolase signatures PDOC00109 2 Phospholipase A2 active sites signatures PDOC50035 1 Phospholipase D phosphodiesterase active site profile PDOC00746 2 Phosphomannose isomerase type I signatures PDOC00105 1 Phosphoribosyl pyrophosphate synthase signature PDOC00319 1 Phosphoribosylglycinamide formyltransferase active site PDOC00164 1 Phosphoribosylglycinamide synthetase signature PDOC00490 1 Phosphoribulokinase signature PDOC00095 1 Phosphorylase pyridoxal-phosphate attachment site PDOC01026 2 Phosphotriesterase family signature and profile PDOC00907 1 Phosphotyrosine interaction domain (PID) profile PDOC51645 1 Photolyase/cryptochrome alpha/beta domain profile PDOC00217 1 Photosynthetic reaction center proteins signature PDOC00347 1 Photosystem I psaA and psaB proteins signature PDOC00786 1 Photosystem I psaG and psaK proteins signature PDOC51445 1 Phycobilisome (PBS) linker domain profile PDOC51443 1 Phytochelatin synthase (PCS) domain profile PDOC00218 2 Phytochrome chromophore attachment site PDOC51485 1 Phytocyanin domain profile PDOC51874 1 Picornavirales 3C/3C-like protease domain profile PDOC51466 1 PINIT domain profile PDOC51532 1 PITH domain profile PDOC50822 1 Piwi domain profile PDOC51210 1 PLA2c domain profile PDOC50900 1 PLAC domain profile PDOC60011 1 Plant C6 type antimicrobial peptide (AMP) signature PDOC00183 1 Plant hemoglobins signature PDOC00516 1 Plant lipid transfer proteins signature PDOC00244 1 Plant thionins signature PDOC00480 1 Plant viruses icosahedral capsid proteins 'S' region signature PDOC50095 1 PLAT domain profile PDOC00222 2 Platelet-derived growth factor (PDGF) family signature and profile PDOC51360 1 Plus3 domain profile PDOC00939 2 PMP-22 / EMP / MP20 family signatures PDOC51433 1 Pointed (PNT) domain profile PDOC00715 1 Pollen proteins Ole e I family signature PDOC50078 1 POLO box domain profile PDOC51309 1 Poly(A)-binding protein C-terminal (PABC) domain profile PDOC01033 2 Polyamine biosynthesis (PABS) domain signature and profile PDOC50093 1 Polycystic kidney disease (PKD) domain profile PDOC00415 1 Polygalacturonase active site PDOC52019 1 Polyketide and metazoan fatty acid synthase dehydratase (PKS/mFAS DH) domain profile PDOC00407 2 Polyprenyl synthases signatures PDOC00461 1 Porphobilinogen deaminase cofactor-binding site PDOC00257 1 Potato inhibitor I family signature PDOC00346 1 Potexviruses and carlaviruses coat protein signature PDOC51779 1 POTRA domain profile PDOC51871 1 Potyviridae P1 protease domain profile PDOC51436 1 Potyvirus NIa protease (NIa-pro) domain profile PDOC00035 4 POU-specific (POUs) domain signatures and profile and POUs atypical domain profile PDOC51742 1 PPC domain profile PDOC00840 2 PpiC-type peptidyl-prolyl cis-trans isomerase signature and profile PDOC00792 2 PPM-type phosphatase domain signature and profile PDOC51858 1 PPPDE domain profile PDOC00562 2 PRD domain profile and signature PDOC50280 3 Pre-SET, post-SET and SET domain profiles PDOC51014 1 Precorrin-6x reductase domain profile PDOC50904 1 PRELI/MSF1 domain profile PDOC00266 1 Prenyl group binding site (CAAX box) PDOC00671 3 Prephenate dehydratase domain signatures and profile PDOC51176 1 Prephenate/arogenate dehydrogenase domain profile PDOC00263 2 Prion protein signatures PDOC00372 1 Profilin signature PDOC00820 1 Prokaryotic diacylglycerol kinase signature PDOC00846 2 Prokaryotic dksA C4-type zinc finger signature and profile PDOC00013 1 Prokaryotic membrane lipoprotein lipid attachment site profile PDOC00392 4 Prokaryotic molybdopterin oxidoreductases signatures and 4Fe-4S domain profile PDOC00342 1 Prokaryotic N-terminal methylation site PDOC00337 2 Prokaryotic sulfate- and thiosulfate-binding proteins signatures PDOC00651 2 Prokaryotic transcription elongation factors signatures PDOC00713 1 Prokaryotic transglycosylases signature PDOC00357 2 Prokaryotic zinc-dependent phospholipase C domain signature and profile PDOC00586 2 Prokaryotic-type carbonic anhydrases signatures PDOC00607 1 Prokaryotic-type class I peptide chain release factors signature PDOC00265 2 Proliferating cell nuclear antigen signatures PDOC01015 1 Prolipoprotein diacylglyceryl transferase signature PDOC00587 1 Prolyl oligopeptidase family serine active site PDOC51334 1 PRONE domain profile PDOC00047 1 Protamine P1 signature PDOC00326 2 Proteasome alpha-type subunit signature and profile PDOC00668 2 Proteasome beta-type subunit signature and profile PDOC00005 1 Protein kinase C phosphorylation site PDOC00100 4 Protein kinases signatures and profile PDOC00785 2 Protein phosphatase 2A regulatory subunit PR55 signatures PDOC00703 1 Protein prenyltransferases alpha subunit repeat profile PDOC00818 1 Protein secE/sec61-gamma signature PDOC00612 2 Protein secY signatures PDOC00985 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature PDOC00933 1 Protozoan/cyanobacterial globins signature PDOC51917 1 Pru (pleckstrin-like receptor for the Ub) domain profile PDOC51411 1 PSP1 C-terminal domain profile PDOC50960 1 Psq-type HTH domain profile PDOC50972 1 Pterin-binding domain profile PDOC00540 2 PTN/MK heparin-binding protein family signatures PDOC00784 2 PTR2 family proton/oligopeptide symporters signatures PDOC00528 7 PTS EIIA domain profiles and phosphorylation site signatures PDOC00795 6 PTS EIIB domain profiles and cysteine phosphorylation site signature PDOC51103 5 PTS EIIC domain profiles PDOC51108 1 PTS EIID domain profile PDOC00318 3 PTS HPr domain profile and phosphorylation sites signatures PDOC50890 1 PUA domain profile PDOC51396 1 PUL domain profile PDOC50302 2 Pumilio RNA-binding repeat and homology domain profiles PDOC00946 1 Purine and other phosphorylases family 1 signature PDOC00954 1 Purine and other phosphorylases family 2 signature PDOC00096 1 Purine/pyrimidine phosphoribosyl transferases signature PDOC00427 1 Putative AMP-binding domain signature PDOC51025 1 PWI domain profile PDOC50812 1 PWWP domain profile PDOC50195 1 PX domain profile PDOC51207 1 PXA domain profile PDOC00073 1 Pyridine nucleotide-disulphide oxidoreductases class-I active site PDOC00496 1 Pyridine nucleotide-disulphide oxidoreductases class-II active site PDOC00815 1 Pyridoxamine 5'-phosphate oxidase signature PDOC00466 1 Pyrokinins signature PDOC01036 2 Pyrrolidone-carboxylate peptidase active sites PDOC50991 1 Pyruvate carboxyltransferase domain profile PDOC51554 1 Pyruvate formate lyase (PFL) domain profile PDOC00101 1 Pyruvate kinase active site signature PDOC51666 1 QLQ domain profile PDOC51370 1 R domain profile PDOC51061 1 R3H domain profile PDOC50916 1 Rab-binding domain profile PDOC51131 1 Rad50 zinc-hook domain profile PDOC00834 1 Radical activating enzymes signature PDOC51918 1 Radical SAM core domain profile PDOC50196 1 Ran binding domain type 1 profile PDOC51286 1 RAP domain profile PDOC50085 1 Rap GTPase activating proteins domain profile PDOC00438 2 Ras GTPase-activating proteins signature and profile PDOC00594 3 Ras guanine-nucleotide exchange factors domain signature and profiles PDOC50200 1 Ras-associating (RA) domain profile PDOC50898 1 Ras-binding domain (RBD) profile PDOC51201 2 RCK N-terminal and C-terminal domain profiles PDOC00131 3 recA family signature and profiles PDOC00212 1 Receptor tyrosine kinase class II signature PDOC00213 1 Receptor tyrosine kinase class III signature PDOC00629 2 Receptor tyrosine kinase class V signatures PDOC00539 2 recF protein signatures PDOC01004 1 recR protein signature PDOC51019 1 Reelin domain profile PDOC00544 3 Regulator of chromosome condensation (RCC1) signatures and profile PDOC51111 1 REJ domain profile PDOC51486 1 REKLES domain profile PDOC51860 1 REM-1 domain profile PDOC00678 2 Renal dipeptidase family signature and profile PDOC00858 1 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature PDOC00843 1 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature PDOC00468 1 Respiratory-chain NADH dehydrogenase 30 Kd subunit signature PDOC00521 1 Respiratory-chain NADH dehydrogenase 49 Kd subunit signature PDOC00555 2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signatures PDOC00554 3 Respiratory-chain NADH dehydrogenase 75 Kd subunit signatures PDOC00570 2 Respiratory-chain NADH dehydrogenase subunit 1 signatures PDOC50110 1 Response regulatory domain profile PDOC50845 1 Reticulon domain profile PDOC50878 1 Reverse transcriptase (RT) catalytic domain profile PDOC51526 1 RFX-type winged-helix DNA-binding domain profile PDOC50132 1 RGS domain profile PDOC51776 1 RH1 domain profile PDOC51777 1 RH2 domain profile PDOC50238 1 Rho GTPase-activating proteins domain profile PDOC51232 1 Rho GTPase-binding/formin homology 3 (GBD/FH3) domain profile PDOC51856 1 Rho RNA-binding (RNA-BD) domain profile PDOC51859 1 Rho-binding (RhoBD) domain profile PDOC00322 3 Rhodanese signatures and profile PDOC00581 1 Riboflavin synthase alpha chain lumazine-binding repeat profile PDOC50879 2 Ribonuclease (RNase) H type-I and type-2 domains profiles PDOC00904 1 Ribonuclease II family signature PDOC00448 2 Ribonuclease III family signature and profile PDOC00983 1 Ribonuclease PH signature PDOC00459 2 Ribonuclease T2 family histidine active sites PDOC00084 1 Ribonucleotide reductase large subunit signature PDOC00317 1 Ribonucleotide reductase small subunit signature PDOC00922 1 Ribosomal protein L1 signature PDOC00853 1 Ribosomal protein L10 signature PDOC00968 1 Ribosomal protein L10e signature PDOC00310 1 Ribosomal protein L11 signature PDOC00625 1 Ribosomal protein L13 signature PDOC00848 1 Ribosomal protein L13e signature PDOC00048 1 Ribosomal protein L14 signature PDOC00386 1 Ribosomal protein L15 signature PDOC00919 1 Ribosomal protein L15e signature PDOC00506 2 Ribosomal protein L16 signatures PDOC00897 1 Ribosomal protein L17 signature PDOC00850 1 Ribosomal protein L18e signature PDOC00778 1 Ribosomal protein L19 signature PDOC00455 1 Ribosomal protein L19e signature PDOC00724 1 Ribosomal protein L1e signature PDOC00384 1 Ribosomal protein L2 signature PDOC00722 1 Ribosomal protein L20 signature PDOC00899 1 Ribosomal protein L21 signature PDOC00901 1 Ribosomal protein L21e signature PDOC00387 1 Ribosomal protein L22 signature PDOC00049 1 Ribosomal protein L23 signature PDOC00852 1 Ribosomal protein L24 signature PDOC00824 1 Ribosomal protein L24e signature PDOC00652 1 Ribosomal protein L27 signature PDOC00851 1 Ribosomal protein L27e signature PDOC00501 1 Ribosomal protein L29 signature PDOC00385 1 Ribosomal protein L3 signature PDOC00551 1 Ribosomal protein L30 signature PDOC00588 2 Ribosomal protein L30e signatures PDOC00880 1 Ribosomal protein L31 signature PDOC00881 1 Ribosomal protein L31e signature PDOC00502 1 Ribosomal protein L32e signature PDOC00503 1 Ribosomal protein L33 signature PDOC00626 1 Ribosomal protein L34 signature PDOC00882 1 Ribosomal protein L34e signature PDOC00721 1 Ribosomal protein L35 signature PDOC00849 1 Ribosomal protein L35Ae signature PDOC00650 1 Ribosomal protein L36 signature PDOC00916 1 Ribosomal protein L36e signature PDOC00827 1 Ribosomal protein L37e signature PDOC00050 1 Ribosomal protein L39e signature PDOC00902 1 Ribosomal protein L44e signature PDOC00309 1 Ribosomal protein L5 signature PDOC00454 2 Ribosomal protein L6 signatures PDOC00900 1 Ribosomal protein L6e signature PDOC00831 1 Ribosomal protein L7Ae signature PDOC00560 1 Ribosomal protein L9 signature PDOC00312 1 Ribosomal protein S10 signature PDOC00053 1 Ribosomal protein S11 signature PDOC00054 1 Ribosomal protein S12 signature PDOC00915 1 Ribosomal protein S12e signature PDOC00556 2 Ribosomal protein S13 signature and profile PDOC00456 1 Ribosomal protein S14 signature PDOC00313 1 Ribosomal protein S15 signature PDOC00600 1 Ribosomal protein S16 signature PDOC00055 1 Ribosomal protein S17 signature PDOC00590 1 Ribosomal protein S17e signature PDOC00056 1 Ribosomal protein S18 signature PDOC00288 1 Ribosomal protein S19 signature PDOC00546 1 Ribosomal protein S19e signature PDOC00744 2 Ribosomal protein S2 signatures PDOC00909 1 Ribosomal protein S21 signature PDOC00764 1 Ribosomal protein S21e signature PDOC00458 1 Ribosomal protein S24e signature PDOC00601 1 Ribosomal protein S26e signature PDOC00898 1 Ribosomal protein S27e signature PDOC00743 1 Ribosomal protein S28e signature PDOC00474 1 Ribosomal protein S3 signature PDOC00917 1 Ribosomal protein S3Ae signature PDOC00549 1 Ribosomal protein S4 signature PDOC00457 1 Ribosomal protein S4e signature PDOC00505 2 Ribosomal protein S5 signature and profile PDOC00805 1 Ribosomal protein S6 signature PDOC00500 1 Ribosomal protein S6e signature PDOC00051 1 Ribosomal protein S7 signature PDOC00730 1 Ribosomal protein S7e signature PDOC00052 1 Ribosomal protein S8 signature PDOC00918 1 Ribosomal protein S8e signature PDOC00311 1 Ribosomal protein S9 signature PDOC00871 1 Ribosomal RNA adenine dimethylases signature PDOC01023 1 Ribosome-binding factor A signature PDOC00142 1 Ribulose bisphosphate carboxylase large chain active site PDOC00833 2 Ribulose-phosphate 3-epimerase family signatures PDOC00177 1 Rieske [2Fe-2S] iron-sulfur domain profile PDOC51789 1 RIG-I-like receptor (RLR) C-terminal regulatory (CTR) domain profile PDOC51386 1 RINT1/TIP20 domain profile PDOC00958 1 RIO1/ZK632.3/MJ0444 family signature PDOC00869 1 Rlu family of pseudouridine synthase signature PDOC00989 1 RNA 3'-terminal phosphate cyclase signature PDOC00945 2 RNA methyltransferase trmA family signatures PDOC00896 1 RNA polymerases beta chain signature PDOC00411 1 RNA polymerases D / 30 to 40 Kd subunits signature PDOC00854 1 RNA polymerases H / 23 Kd subunits signature PDOC00855 1 RNA polymerases K / 14 to 18 Kd subunits signature PDOC00889 1 RNA polymerases L / 13 to 16 Kd subunits signature PDOC00790 1 RNA polymerases M / 15 Kd subunits signature PDOC00856 1 RNA polymerases N / 8 Kd subunits signature PDOC50507 6 RNA-directed RNA polymerase catalytic domain profiles PDOC51472 1 RNA-recognition motif (RRM) Nup35-type domain profile PDOC00866 1 ROK family signature PDOC51073 1 RPEL repeat profile PDOC51071 1 RpiR-type HTH domain profile PDOC51153 1 RPW8 domain profile PDOC01035 2 Rrf2-type HTH domain profile PDOC51849 1 RsgI N-terminal anti-sigma domain profile PDOC00998 1 RsmI AdoMet-dependent methyltransferase protein family signature PDOC51879 1 RST domain profiles PDOC00885 1 Rsu family of pseudouridine synthase signature PDOC51728 1 Rtt109-type histone acetyltransferase (HAT) domain profile PDOC51889 1 Rubella virus (RUBV) nonstructural (NS) protease domain profile PDOC00179 1 Rubredoxin signature PDOC50903 1 Rubredoxin-like domain profile PDOC50826 1 RUN domain profile PDOC51062 1 Runt domain profile PDOC50908 1 RWD domain profile PDOC51519 1 RWP-RK domain profile PDOC00275 1 S-100/ICaBP type calcium binding protein signature PDOC00603 2 S-adenosyl-L-homocysteine hydrolase signatures PDOC01038 1 S-adenosylmethionine decarboxylase signature PDOC00369 2 S-adenosylmethionine synthase signatures PDOC00823 1 S-layer homology (SLH) domain profile PDOC50126 2 S1 domain profiles PDOC50889 1 S4 RNA-binding domain profile PDOC50275 1 Sac phosphatase domain profile PDOC00810 2 SAICAR synthetase signatures PDOC50105 1 SAM domain profile PDOC52014 1 SAMD1-like winged helix (WH) domain profile PDOC50864 1 SAND domain profile PDOC51293 1 SANT domain profile PDOC50800 1 SAP motif profile PDOC51110 1 Saposin A-type domain profile PDOC50015 1 Saposin B-type domain profile PDOC50951 1 SARAH domain profile PDOC51920 1 Sarbecovirus 9b domain profile PDOC51940 2 Sarbecovirus Nsp3c-N and Betacoronavirus Nsp3c-M domains profiles PDOC51919 1 Sarbecovirus X4e domain profile PDOC51964 1 SARS ORF8 accessory protein immunoglobulin (Ig)-like domain profile PDOC51505 1 SCA7 domain profile PDOC50804 1 SCAN box profile PDOC60028 1 Scorpion calcine family signature PDOC51200 1 Scorpion short toxin chloride channel inhibitor subfamily profile PDOC00875 1 Scorpion short toxins signature PDOC50024 1 SEA domain profile PDOC50190 1 SEC7 domain profile PDOC01016 2 SecA family signature and profile PDOC00338 1 Secretoglobin (SCGB) family profile PDOC51695 1 Sedolisin domain profile PDOC51534 1 SEFIR domain profile PDOC51004 1 Sema domain profile PDOC00282 1 Seminal vesicle protein I repeats signature PDOC00446 1 Seminal vesicle protein II repeats signature PDOC51399 1 SEP domain profile PDOC51700 1 SEPARIN core domain profile PDOC51719 1 Septin-type guanine nucleotide-binding (G) domain profile PDOC50099 20 Sequence regions enriched in a particular amino acid profiles PDOC00122 2 Serine carboxypeptidases, active sites PDOC00090 1 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site PDOC00125 4 Serine proteases, subtilase family, active sites signatures and domain profile PDOC00124 3 Serine proteases, trypsin family, signatures and profile PDOC00571 2 Serine proteases, V8 family, active sites PDOC00149 1 Serine/threonine dehydratases pyridoxal-phosphate attachment site PDOC00115 1 Serine/threonine specific protein phosphatases signature PDOC00256 1 Serpins signature PDOC51053 1 SERTA domain profile PDOC00762 1 Serum amyloid A proteins signature PDOC51518 1 SGF29 C-terminal domain profile PDOC51048 1 SGS domain profile PDOC51781 1 SH3b domain profile PDOC00248 1 Shiga/ricin ribosomal inactivating toxins active site signature PDOC00868 1 Shikimate kinase signature PDOC51670 1 ShKT domain profile PDOC01053 1 Short hematopoietin receptor family 1 signature PDOC01054 1 Short hematopoietin receptor family 2 signature PDOC00060 1 Short-chain dehydrogenases/reductases family signature PDOC00593 3 Sigma-54 factors family signatures and profile PDOC00579 4 Sigma-54 interaction domain signatures and profile PDOC00814 1 Sigma-70 factors ECF subfamily signature PDOC00592 2 Sigma-70 factors family signatures PDOC00418 3 Signal peptidases I signatures PDOC00669 1 Signal peptidases II signature PDOC51500 1 Sin domain profile PDOC51302 1 Single-minded C-terminal domain profile PDOC00602 1 Single-strand binding (SSB) domain profile PDOC50305 1 Sirtuin catalytic domain profile PDOC51464 1 SIS domain profile PDOC00334 3 Site-specific recombinase catalytic domain signatures and profile PDOC00870 1 SLC26A transporters signature PDOC52002 1 Sm domain profile PDOC00434 2 Small cytokines (intercrine/chemokine) signatures PDOC51417 8 Small GTPase family profiles PDOC00791 1 Small heat shock protein (sHSP) domain profile PDOC00355 1 Small hydrophilic plant seed proteins signature PDOC00276 2 Small, acid-soluble spore proteins, alpha/beta type, signatures PDOC50828 1 Smr domain profile PDOC00245 1 Snake toxins signature PDOC50225 1 SOCS box domain profile PDOC00328 2 Sodium and potassium ATPases beta subunits signatures PDOC00681 1 Sodium:alanine symporter family signature PDOC00591 2 Sodium:dicarboxylate symporter family signatures PDOC00680 1 Sodium:galactoside symporter family signature PDOC00533 3 Sodium:neurotransmitter symporter family signatures and profile PDOC00429 3 Sodium:solute symporter family signatures and profile PDOC00978 1 Sodium:sulfate symporter family signature PDOC50831 1 SoHo domain profile PDOC50404 2 Soluble glutathione S-transferase N- and C-terminal domain profiles PDOC00189 1 Solute carrier (Solcar) repeat profile PDOC00453 2 Somatomedin B (SMB) domain signature and profile PDOC00239 2 Somatotropin, prolactin and related hormones signatures PDOC51516 1 Sox C-terminal domain profile PDOC00255 1 Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature PDOC00758 2 Spermadhesins family signatures PDOC60029 1 Spider toxin CSTX family signature PDOC50917 1 SPOC domain profile PDOC51494 1 SpoIVB peptidase domain profile PDOC51020 1 Spondin domain profile PDOC51724 1 SPOR domain profile PDOC51740 1 SpoVT-AbrB domain profile PDOC51227 1 Sprouty (SPR) domain profile PDOC51382 1 SPX domain profile PDOC00802 2 Squalene and phytoene synthases signatures PDOC00258 1 Squash family of serine protease inhibitors signature PDOC50001 1 Src homology 2 (SH2) domain profile PDOC50002 1 Src homology 3 (SH3) domain profile PDOC00348 2 SRCR domain signature and profile PDOC00272 1 SRP54-type proteins GTP-binding domain signature PDOC01021 1 SsrA-binding protein PDOC00353 1 Staphylocoagulase repeat signature PDOC00250 2 Staphylococcal enterotoxins / Streptococcal pyrogenic exotoxins signatures PDOC50848 1 START domain profile PDOC50801 1 STAS domain profile PDOC00487 3 Stathmin family signatures and stathmin-like (SLD) domain profile PDOC51312 3 Steadiness box, VPS28 N-terminal and VPS37 C-terminal domains profiles PDOC50244 1 Steroid 5-alpha reductase C-terminal domain profile PDOC00780 2 Sterol reductase family signatures PDOC50156 1 Sterol-sensing domain (SSD) profile PDOC51070 1 Stonin homology domain (SHD) profile PDOC52028 2 Streptococcal M proteins C repeat and D repeats region profiles PDOC51965 1 Streptococcus antigen I/II alanine-rich (Ag I/II A) repeat profile PDOC00766 1 Streptomyces subtilisin-type inhibitors signature PDOC00596 1 Stress-induced proteins SRP1/TIP1 family signature PDOC51502 1 Stress-response A/B barrel domain profile PDOC51425 1 Stromalin conservative (SCD) domain profile PDOC00767 2 Succinate dehydrogenase cytochrome b subunit signatures PDOC50228 1 SUEL-type lectin domain profile PDOC00190 2 Sugar transport proteins signatures PDOC00117 2 Sulfatases signatures PDOC51469 1 SUN domain profile PDOC51192 3 Superfamilies 1 and 2 helicase domain profiles PDOC51206 2 Superfamily 3 helicase domain profile PDOC51199 1 Superfamily 4 helicase domain profile PDOC01040 1 SURF1 family profile PDOC01041 1 SURF4 family signature PDOC00298 1 Surfactant associated polypeptide SP-C palmitoylation sites PDOC50128 1 SURP motif repeat profile PDOC50923 1 Sushi/CCP/SCR domain profile PDOC51673 1 SUZ domain profile PDOC51938 1 SUZ-C domain profile PDOC51925 1 SWIB/MDM2 domain profile PDOC50934 1 SWIRM domain profile PDOC00345 2 Synapsins signatures PDOC00368 1 Synaptobrevin signature PDOC00525 1 Synaptophysin / synaptoporin signature PDOC51847 1 Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile PDOC00745 1 Syndecans signature PDOC00709 1 Syntaxin / epimorphin family signature PDOC00972 3 T-box domain signatures and profile PDOC50192 1 t-SNARE coiled-coil homology domain profile PDOC00240 1 Tachykinin family signature PDOC51119 1 TAFH/NHR1 domain profile PDOC51281 1 TAP C-terminal (TAP-C) domain profile PDOC00936 1 TatC family signature PDOC00836 3 TatD deoxyribonuclease family PDOC00201 2 Tau and MAP proteins tubulin-binding repeat signature and profile PDOC50086 1 TBC/rab GAP domain profile PDOC51369 1 TCP domain profile PDOC00479 2 TEA domain signature and profile PDOC51361 1 Teneurin N-terminal domain profile PDOC51181 2 Tensin phosphatase and C2 domain profiles PDOC51226 1 TEP1 N-terminal repeat profile PDOC00825 1 Terpene synthases signature PDOC00830 2 TetR-type HTH domain signature and profile PDOC00316 2 Tetrahydrobiopterin-dependent aromatic amino acid hydroxylase family signature and profile PDOC00616 2 Tetrahydrofolate dehydrogenase/cyclohydrolase signatures PDOC51344 1 TFE/IIEalpha-type HTH domain profile PDOC51351 1 TFIIE beta central core DNA-binding domain profile PDOC51321 1 TFIIS central domain profile PDOC51319 1 TFIIS N-terminal domain profile PDOC51364 1 TGF-beta binding (TB) domain profile PDOC00223 2 TGF-beta family signature and profile PDOC51880 1 TGS domain profile PDOC00286 2 Thaumatin family signature and profile PDOC00865 3 Thermonuclease domain signatures and profile PDOC00166 1 Thiamine pyrophosphate enzymes signature PDOC00436 1 Thiol-activated cytolysins signature PDOC00092 3 Thiolases signatures PDOC00172 2 Thioredoxin family active site signature and domain profile PDOC51236 1 Thrombospondin C-terminal domain profile PDOC50092 1 Thrombospondin type-1 (TSP1) repeat profile PDOC51234 1 Thrombospondin type-3 (TSP3) repeat profile PDOC51165 1 THUMP domain profile PDOC00557 1 Thymidine and pyrimidine-nucleoside phosphorylases signature PDOC00524 1 Thymidine kinase cellular-type signature PDOC01034 1 Thymidylate kinase signature PDOC00086 1 Thymidylate synthase active site PDOC00433 1 Thymosin beta-4 family signature PDOC00377 2 Thyroglobulin type-1 domain signature and profile PDOC51320 1 Tify domain profile PDOC50104 1 TIR domain profile PDOC00541 1 Tissue factor signature PDOC00260 1 Tissue inhibitors of metalloproteinases signature PDOC50922 1 TLC domain profile PDOC51886 1 TLDc domain profile PDOC00224 2 TNF family signature and profile PDOC00561 2 TNFR/NGFR family cysteine-rich region signature and profile PDOC52015 1 TonB C-terminal domain profile PDOC00354 3 TonB-dependent receptor (TBDR) proteins signatures and profile PDOC00333 2 Topoisomerase (Topo) IA-type active site signature and catalytic domain profile PDOC00159 2 Topoisomerase (Topo) IB-type active site signature and catalytic domain profile PDOC52040 1 Topoisomerase (Topo) IIA-type catalytic domain profile PDOC52041 1 Topoisomerase (Topo) IIB-type catalytic domain profile PDOC50880 1 Toprim domain profile PDOC51996 1 Toxin-related mono-ADP-ribosyltransferase (TR mART) core domain profile PDOC50005 2 TPR repeat profiles PDOC00973 1 Tpx family signature PDOC50926 1 TRAM domain profile PDOC00741 2 Transaldolase signatures PDOC00624 1 Transcription factor TFIIB repeat signature PDOC00303 1 Transcription factor TFIID repeat signature PDOC00775 1 Transcription termination factor nusG signature PDOC00182 4 Transferrin-like domain signatures and profile PDOC00473 1 Transglutaminases active site PDOC00635 2 Transketolase signatures PDOC00862 1 Translation initiation factor SUI1 profile PDOC00273 2 Translational (tr)-type guanine nucleotide-binding (G) domain signature and profile PDOC00768 3 Translationally controlled tumor protein (TCTP) domain signatures and profile PDOC00371 1 Transmembrane 4 family signature PDOC00801 1 Transposases, IS30 family, signature PDOC00770 1 Transposases, Mutator family, signature PDOC00617 2 Transthyretin signatures PDOC00717 2 Trehalase signatures PDOC51873 1 TRIAD supradomain profile PDOC00155 2 Triosephosphate isomerase (TIM) family signature and profile PDOC50211 4 Tripartite DENN domain profiles PDOC51709 1 TrmE-type guanine nucleotide-binding (G) domain profile PDOC50886 1 tRNA-binding domain profile PDOC00290 1 Tropomyosins signature PDOC50988 1 TROVE domain profile PDOC00574 3 Trp-Asp (WD-40) repeats signature and profiles PDOC50984 1 TRUD domain profile PDOC00151 1 Tryptophan synthase alpha chain signature PDOC00152 1 Tryptophan synthase beta chain pyridoxal-phosphate attachment site PDOC01022 2 TsaA-like domain signature and profile PDOC00991 1 TSC-22 / dip / bun family signature PDOC51221 1 TTL domain profile PDOC00923 2 Tub family signatures PDOC00199 1 Tubulin subunits alpha, beta, and gamma signature PDOC00200 1 Tubulin-beta mRNA autoregulation signal PDOC50304 1 Tudor domain profile PDOC51318 1 Twin arginine translocation (Tat) signal profile PDOC00174 1 Type-1 copper (blue) proteins signature PDOC00398 2 Tyrosinase signatures PDOC00007 2 Tyrosine kinase phosphorylation sites PDOC51898 2 Tyrosine recombinase domains profiles PDOC00323 4 Tyrosine specific protein phosphatases active site signature and domains profiles PDOC51698 1 U-box domain profile PDOC00727 1 UbiA prenyltransferase family signature PDOC00911 2 ubiE/COQ5 methyltransferase family signatures PDOC01008 1 ubiH/COQ6 monooxygenase family signature PDOC00127 1 Ubiquitin carboxyl-terminal hydrolases family 1 cysteine active site PDOC00271 2 Ubiquitin domain signature and profile PDOC00750 3 Ubiquitin specific protease (USP) domain signatures and profile PDOC00463 2 Ubiquitin-activating enzyme signatures PDOC50030 1 Ubiquitin-associated domain (UBA) profile PDOC00163 2 Ubiquitin-conjugating (UBC) active site signature and core domain profile PDOC50330 1 Ubiquitin-interacting motif (UIM) domain profile PDOC51982 1 Ubiquitin-like (ULD) domain profile PDOC50600 1 Ubiquitin-like protease family profile PDOC50033 1 UBX domain profile PDOC00359 1 UDP-glycosyltransferases signature PDOC51322 1 UEV domain profile PDOC51497 1 UMA domain profile PDOC50173 1 UmuC domain profile PDOC00931 1 Uncharacterized protein family UPF0001 signature PDOC00959 1 Uncharacterized protein family UPF0003 signature PDOC00943 1 Uncharacterized protein family UPF0012 signature PDOC00934 1 Uncharacterized protein family UPF0016 signature PDOC00872 1 Uncharacterized protein family UPF0017 signature PDOC00969 1 Uncharacterized protein family UPF0020 signature PDOC00971 1 Uncharacterized protein family UPF0021 signature PDOC00974 1 Uncharacterized protein family UPF0023 signature PDOC00975 1 Uncharacterized protein family UPF0024 signature PDOC00976 1 Uncharacterized protein family UPF0025 signature PDOC00990 1 Uncharacterized protein family UPF0027 signature PDOC00951 1 Uncharacterized protein family UPF0028 signature PDOC00707 1 Uncharacterized protein family UPF0029 signature PDOC00884 1 Uncharacterized protein family UPF0033 signature PDOC00874 1 Uncharacterized protein family UPF0034 signature PDOC00994 1 Uncharacterized protein family UPF0036 signature PDOC01018 1 Uncharacterized protein family UPF0047 signature PDOC01010 1 Uncharacterized protein family UPF0054 signature PDOC01013 1 Uncharacterized protein family UPF0057 signature PDOC01024 1 Uncharacterized protein family UPF0067 signature PDOC00838 1 Uncharacterized protein family UPF0076 signature PDOC01006 1 Uncharacterized protein family UPF0758 signature PDOC00817 1 Undecaprenyl pyrophosphate synthase family signature PDOC51997 1 Upf1 cysteine-histidine-rich (CH-rich) domain profile PDOC00121 1 Uracil-DNA glycosylase signature PDOC00133 3 Urease domain signatures and profile PDOC00315 1 Uricase signature PDOC00947 1 Urocanase signature PDOC00656 2 Uroporphyrin-III C-methyltransferase signatures PDOC00705 2 Uroporphyrinogen decarboxylase signatures PDOC00757 1 Urotensin II signature PDOC50151 1 UVR domain profile PDOC50165 1 UvrC family homology region profile PDOC51198 2 UvrD-like DNA helicase domain profiles PDOC50892 1 v-SNARE coiled-coil homology domain profile PDOC51778 1 VASt domain profile PDOC51821 1 Velvet domain profile PDOC00180 1 Vertebrate metallothioneins signature PDOC51717 1 Very large inducible GTPase (VLIG)-type guanine nucleotide-binding (G) domain profile PDOC50179 1 VHS domain profile PDOC51819 1 Vicinal oxygen chelate (VOC) domain profile PDOC00568 2 Vinculin family signatures PDOC00211 1 Visual pigments (opsins) retinal binding site PDOC51468 1 VIT domain profile PDOC51211 1 Vitellogenin domain profile PDOC51137 1 VM domain profile PDOC51310 1 VPS28 C-terminal domain profile PDOC51205 1 VPS9 domain profile PDOC50234 1 VWFA domain profile PDOC00928 2 VWFC domain signature and profile PDOC51233 1 VWFD domain profile PDOC51363 1 W2 domain profile PDOC51136 1 WAC domain profile PDOC00026 1 WAP-type 'four-disulfide core' domain profile PDOC51271 1 WAPL domain profile PDOC51977 1 WGR domain profile PDOC50229 1 WH1 domain profile PDOC51082 1 WH2 domain profile PDOC00614 2 WHEP-TRS domain signature and profile PDOC50814 1 WIF domain profile PDOC51397 1 WLM domain profile PDOC00219 1 Wnt-1 family signature PDOC51667 1 WRC domain profile PDOC50811 1 WRKY domain profile PDOC51212 1 WSC domain profile PDOC50020 2 WW/rsp5/WWP domain signature and profile PDOC50918 1 WWE domain profile PDOC00860 1 Xanthine/uracil permeases family signature PDOC51389 1 Xin repeat profile PDOC00611 2 XPA protein signatures PDOC00658 2 XPG protein signatures PDOC51827 1 XRN2-binding (XTBD) domain profile PDOC51939 1 xRRM domain profile PDOC00156 1 Xylose isomerase family profile PDOC51664 1 YcaO domain profile PDOC51648 1 YcgL domain profile PDOC51015 1 YDG domain profile PDOC00718 2 Yeast PIR proteins repeats signature and profile PDOC51037 1 YEATS domain profile PDOC51979 1 YebF/Cmi domain profile PDOC51792 1 Yippee domain profile PDOC00806 3 YjeF C-terminal domain signatures and profile PDOC51385 1 YjeF N-terminal domain profile PDOC00883 1 YrdC-like domain profile PDOC50882 1 YTH domain profile PDOC50139 1 Z-binding domain profile PDOC51915 1 ZAD domain profile PDOC00123 2 Zinc carboxypeptidases, zinc-binding regions signatures PDOC51036 1 Zinc finger A20-type profile PDOC51039 1 Zinc finger AN1-type profile PDOC50119 1 Zinc finger B-box-type profile PDOC50808 1 Zinc finger BED-type profile PDOC51113 1 Zinc finger Btk-type profile PDOC51799 1 Zinc finger C2H2 AKAP95-type profile PDOC00028 2 Zinc finger C2H2-type domain signature and profile PDOC51807 1 Zinc finger C2HC baculovirus (BV)-type profile PDOC51804 1 Zinc finger C2HC LYAR-type profile PDOC51803 1 Zinc finger C2HC RNF-type profile PDOC52027 1 Zinc finger C2HC/C3H-type profile PDOC50103 1 Zinc finger C3H1-type profile PDOC51896 1 Zinc finger C4H2-type profile PDOC52013 1 Zinc finger C6H2-type profile PDOC51810 1 Zinc finger CCHC FOG-type profile PDOC51811 1 Zinc finger CCHC HIVEP-type profile PDOC51801 1 Zinc finger CCHC NOA-type profile PDOC50158 1 Zinc finger CCHC-type profile PDOC51802 1 Zinc finger CCHHC-type profile PDOC51800 1 Zinc finger CHHC U11-48K-type profile PDOC51266 2 Zinc finger CHY-type and CTCHY-type profiles PDOC51050 1 Zinc finger CW-type profile PDOC51058 1 Zinc finger CXXC-type profile PDOC51265 1 Zinc finger Dbf4-type profile PDOC51501 1 Zinc finger DNL-type profile PDOC50884 2 Zinc finger Dof-type signature and profile PDOC51024 1 Zinc finger FCS-type profile PDOC51795 1 Zinc finger FLZ-type profile PDOC50178 1 Zinc finger FYVE/FYVE-related type profile PDOC51999 1 Zinc finger GRF-type profile PDOC51083 1 Zinc finger HIT-type profile PDOC50876 1 Zinc finger integrase-type profile PDOC51341 1 Zinc finger large T-antigen (T-ag) D1-type profile PDOC50171 1 Zinc finger matrin-type profile PDOC50865 2 Zinc finger MYND-type signature and profile PDOC51522 1 Zinc finger nanos-type profile PDOC50016 2 Zinc finger PHD-type signature and profile PDOC00379 2 Zinc finger phorbol-ester/DAG-type signature and profile PDOC00360 2 Zinc finger poly(ADP-ribose) polymerase (PARP)-type signature and profile PDOC51765 1 Zinc finger RAG1-type profile PDOC50199 2 Zinc finger RanBP2-type signature and profile PDOC52036 2 Zinc finger reverse gyrase (RG) N-terminal- and C-terminal-type profiles PDOC51292 1 Zinc finger RING-CH-type profile PDOC00449 2 Zinc finger RING-type signature and profile PDOC51479 1 Zinc finger RTR1-type profile PDOC51981 1 Zinc finger RZ-type profile PDOC51141 1 Zinc finger SBP-type profile PDOC51081 1 Zinc finger SIAH-type profile PDOC51044 1 Zinc finger SP-RING-type profile PDOC50966 1 Zinc finger SWIM-type profile PDOC50134 1 Zinc finger TAZ-type profile PDOC51134 1 Zinc finger TFIIB-type profile PDOC00383 2 Zinc finger TFIIS-type signature and profile PDOC50950 1 Zinc finger THAP-type profile PDOC50145 1 Zinc finger TRAF-type profile PDOC50271 1 Zinc finger UBP-type profile PDOC51157 1 Zinc finger UBR-type profile PDOC51905 4 Zinc finger UBZ1-, UBZ2-, UBZ3-, and UBZ4-type profiles PDOC51872 1 Zinc finger ZBR-type profile PDOC50135 2 Zinc finger ZZ-type signature and profile PDOC00058 2 Zinc-containing alcohol dehydrogenases signatures PDOC51523 1 Zinc-finger ZF-HD dimerization-type profile PDOC00378 2 Zn(2)-C6 fungal-type DNA-binding domain signature and profile PDOC00577 2 ZP domain signature and profile PDOC51145 1 ZU5 domain profile