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SWISS-2DPAGE

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WORLD-2DPAGE List
Index to 2-D PAGE databases and services

This page contains references to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services. You may also found related information in the Proteomics Links page of the Swiss Proteomics Society. Links to worldwide biological and medical information resources are on the links page of ExPASy. Links to Geneva and Swiss biological servers, institutes, etc. are on the Local page of ExPASy.

For a reference to federated 2-D PAGE database, see Appel et Al., Electrophoresis 17, 1996, 540-546, 1996.

[Announcements][2-DE databases][Services & Software][Journals & Societies][Meetings]

2-DE databases
Guidelines for building a federated 2-DE database 2D Hunt - Search 2-DE related sites on the Web Database servers: federated partially federated other How to link to specific entry of these databases
Multi species
World-2DPAGE Portal	A dynamic portal to query simultaneously World-Wide gel-based proteomics databases
World-2DPAGE Repository	A public standards-compliant repository for gel-based proteomics data published in the literature
SWISS-2DPAGE (Swiss Institute of Bioinformatics)	Human	Liver, Plasma, HepG2, Red blood cells, Lymphoma, HepG2 Secreted Proteins, Cerebrospinal Fluid, Macrophage Like Cell Line (U937), Erythroleukemia Cell, Platelet, Kidney, Promyelocytic Leukemia Cells (HL60), Colorectal epithelia cells, Colorectal adenocarcinoma cell line (DL-1), Soluble nuclear proteins and matrix from liver tissue, Nucleoli from Hela cells (1D and 2D), Lymphocytes
	Mus musculus	Liver, Gastrocnemius muscle, Pancreatic islet cells, Brown adipose tissue, White adipose tissue, Soluble nuclear proteins and matrix from liver tissue
	Arabidopsis thaliana, Dictyostelium discoideum, Escherichia coli (several pI ranges and DIGE 4.5-6.5), Saccharomyces cerevisiae, Staphylococcus aureus (N315)
SIENA-2DPAGE - 2D-PAGE database at Department of Molecular Biology, University of Siena, Italy	Human	Breast ductal carcinoma and histologically normal tissue, Amniotic fluid
	Chlamydia trachomatis, Caenorhabditis elegans
2-DE database at Max Planck Institute for Infection Biology, Berlin, Germany	Human	Jurkat T-cells, synovial fluid exosomes
	Mouse	Mammary gland, urea soluble lens proteins
	Rat	liver and muscle 20S proteasome subtype II & IV
	Bacillus amyloliquefaciens, Bacillus anthracis, Bartonella henselae, Borrelia garinii, Chlamydia pneumoniae, Chlamydophila pneumoniae, Francisella tularensis, Helicobacter pylori, Mycobacterium bovis, Mycobacterium tuberculosis, Mycoplasma pneumoniae, Paracoccus denitrificans, Vibrio cholerae
2-DE maps at ISPA, Institute of Science of Food Production, Turin, Italy	Human	colostrum Milk
	Acientobacter radioresistens
Mammalia
Cornea 2D-PAGE - Aarhus University, Denmark	Human	Cornea (various pI ranges)
DOSAC-COBS 2D-PAGE - University of Palermo, Italy	Human	various breast cancer samples (cells, serum, etc.), dermal fibroblasts, mammary cells, lymphocytes, U937 and HL60 cell lines
Human and mouse 2-D PAGE databases - Danish Centre for Human Genome Research	Human	Keratinocytes, Transitional cell carcinomas, Bladder squamous cell carcinomas, Urine, Fibroblasts
	Mouse	Kidney
RAT HEART-2DPAGE (German Heart Institute Berlin)	Rat	Heart
HEART-2DPAGE (German Heart Institute Berlin)	Human	Heart (ventricle, atrium)
HSC-2DPAGE(Heart Science Centre, Harefield Hospital)	Human	Heart (ventricle), endothelial cells
HSC-2DPAGE(Heart Science Centre, Harefield Hospital)	Rat, Dog	Heart (ventricle)
HP-2DPAGE (Heart 2-DE Database, MDC, Berlin)	Human	Heart (ventricule)
OGP-WWW database (Oxford GlycoProteomics Webpage, UK)	Human	Platelet (various pI ranges), Uveal melanoma
Peroxisomal 2D-PAGE - Upsala University, Sweden	Mus musculus	liver, liver peroxisome
PPDB - PhosphoProtein DataBase	Murine	Lymphocytes
REPRODUCTION-2DPAGE (Nanjing Medical University, P. R. China)	Human	Ovary, Testis
	Mouse	Testis
Washington University Inner Ear Protein Database	Human	Perilymph
Washington University Inner Ear Protein Database	Guinea pig	Endolymph, organ of Corti, otoconia, tectorial membrane
Toothprint (2-DE gels of dental tissues - University of Otago, Dunedin, New Zealand)	Rat	Enamel
JPLS Proteomics database at Ludwig Institute for Cancer Research, Melbourne, Australia	Human	Breast carcinoma cell line, Placenta, Colorectal cell line
	Mouse	colonic crypts
BALF 2D Database at Department of Biological Chemistry, University of Mons-Hainaut, Belgium	Human, Mouse	Broncho-alveolar lavage fluid
Bovine maps at Proteomics and Mass Spectrometry Laboratory, Napoli, Italy	Bovine	Kidney, liver, skeletal muscle, plasma, red blood cells
2-DE Map of Cerebrospinal Fluid Proteome from Lee Research Group at Cornell University, USA	Human	Cerebrospinal Fluid
2-DE maps from the Proteomics and Protein Structure Study Group, at Milano University, Italy	Cow	Sera (during dioestrus), positive acute-phase reactants detected in serum from a cow with udder edema (inset C)
	Rat	Serum (control Sprague-Dawley (CD) female and male rats, turpentine-treated rats, diabetic rats, stroke-prone rats), urine (control female and male rats, stroke-prone rats), cerebrospinal fluid (control and stroke-prone rats)
	Mouse	Serum
HUVEC (Proteomics of Human Umbilical Vein Endothelial Cell at Hopital Saint-Antoine, Paris, France)	Human	Umbilical vein endothelial cell
Tooth Pulp 2-D at Proteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland	Human	Tooth pulp tissue (healthy and carious)
Vascular Cell database at Department of Cardiac & Vascular Sciences, University of London, UK	Mouse	aortic smooth muscle cells, Sca-1+ progenitor cells, Embryonic Stem Cells
NCI-LECB 2D PAGE Gel Image Data Sets, USA	Human	leukemias (AML, ALL, CLL, HCL and other), HL-60 cell line, Molt-4 cell line, serum (Fetal Alchohol Syndrome, Rett Syndrome), Urine (cadmium-exposure, mercury-exposure) - 500 gel images

Plant
ANU-2DPAGE - 2-DE database (Rice anther and Medicago truncatula) of the Australian National University, Canberra, Australia Proteome database - Tabacco BY-2 cell suspension culture, Musa meristem, Arabidopsis root at University of Antwerp, Belgium Rice Proteome Database at National Institute of Agrobiological Sciences, Japan Arabidopsis 2D gel at Institut des Sciences du Végétal, CNRS - Gif-sur-Yvette, France Arabidopsis Seed Proteome at INRA, Lyon, France GABI primary database - 2-DE database for 8 different Arabidospis thaliana tissues (inflorescence, stem, primary leaf, leaf, seed, seedling, silique, root) of the Genomanalyse im biologischen System Pflanze, Germany NASC Proteomics database for Arabidopsis data at the Nottingham Arabidopsis Stock Centre, University of Nottingham, UK Plant Proteomics database (PROTICdb) at UMR de Genetique Vegetale du Moulon, Gif-sur-Yvette, France 2-D gels for maritime pine at INRA, Bordeaux, France 2-D PAGE of Medicago truncatula and other plants at The Samuel Roberts Noble Foundation, Ardmore, USA AMPP - the Arabidopsis mitochondrial proteome project at Abteilung Angewandte Genetik, Universität Hannover, Germany Mt Proteomics - the symbiotic proteomics of Medicago truncatula roots at INRA, Epoisses, France
Yeast
COMPLUYEAST-2DPAGE - 2-DE database (Candida albicans, Saccharomyces cerevisiae) at Universidad complutense Madrid, Spain YMP - Yeast Mitochondrial Proteome at Proteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland YPM - Yeast Protein Map at Institut de Biochimie et Génétique Cellulaires, Bordeaux, France 2-DE database of Saccharomyces cerevisiae (IPG 6-12) at Technische Universität München, Germany

Other Eukaryota
KAIKO 2DDB - the Silkworm-2DPAGE (various organs, tissues at various developmental stages) from National Institute of Agrobiological Sciences, Japan FishProm - 2DE gels from salmonid fish tissue extracts at University of Aberdeen, UK

Archaea, Bacteria, Viruses and Parasites
2DBase-Ecoli - A 2D-PAGE Database of Escherichia coli (various growing conditions) at University of Bielefeld - Fermentation Engineering Group (AGFT), Germany CGL14067-2DPAGE - A 2D-PAGE Database of Corynebacterium glutamicum ATCC14067 (several pI ranges) at Laboratory of Microbial Physiology, Hokkaido University, Japan PHCI-2DPAGE - Parasite host cell interaction 2D-PAGE database, at Department of Medical Microbioloy and Immunology, University of Aarhus, Denmark Plasmo2Dbase - Plasmodium falciparum 2-DE database at Indian Institute of Science, Bangalore, India Sub2D - 2D PROTEIN INDEX of Bacillus subtilis, at Department of BioSciences, University of Greifswald, Germany BiPOS - Proteomics database of oral bacteria (Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Streptococcus mutans), at Kyushu University Faculty of Dental Science, Japan Helicobacter pylori Proteome 2-D Gel Database, at Kenyon College, Ohio, USA Listeria monocytogenes 2-DE maps, at INRA, Clermont-Ferrand, France Methanococcus jannaschii 2D database,at Argonne protein mapping group server, Chicago, USA Pseudomonas syringae 2DE Maps,from Lee Research Group at Cornell University, USA SWICZ: Swiss-Czech Proteomics Server - developmental 2D-PAGE databases for Caulobacter crescentus, Streptomyces coelicolor, Streptomyces granaticolor, Neisseria meningitidis, at Inst. of Microbiology, Prague, Czech Republic Streptomyces coelicolor Reference Gel, University of Aberystwyth, Wales, UK Cyano2Dbase - Synechocystis sp. PCC6803, at the Kazuka DNA Research Institute, Japan 2-D PAGE Aberdeen (Haemophilus influenzae and Neisseria meningitidis), at Department of Medical Microbiology, University of Aberdeen, Scotland Toxoplasma gondii - 2D map, at the Institute for Medical Microbiology and Virology, Heinrich-Heine-University Duesseldorf, Germany Proteome of Xylella fastidiosa, at Laboratorio de Quimica de Proteinas - Laquip Unicamp - Brazil Parasite proteome maps - Caenorhabditis elegans, Fasciola hepatica, Hymenolepis diminuta, Monezia expansa, Necator americanus, at the Institute of Biological Sciences, University of Aberystwyth, Wales, UK
Cell lines
TMIG-2DPAGE - Age-related Proteome Database at Tokyo Metropolitan Institute of Gerontology, Japan Embryonal Stem Cells at University of Edinburgh Proteome Database of Human T Helper Cells at Turku Centre for Biotechnology, Finland Human hematopoietic and lymphoid cell lines at Laboratoire de Biochimie et Technologie des Proteines, Bobigny, France

Services	Software
Local services from the ExPASy server are marked by .
Laboratory services Proteomics Core Facility (previously known as SWISS-2DSERVICE) Bioinformatics Core Facility for Proteomics ESA, Inc. - 2-D Electrophoresis Lab Services Kendrick Labs - Protein Electrophoresis Services with a Specialty of 2D Electrophoresis Education Proteomics course database maintained by the Swiss Proteomics Society Master's degree in Proteomics and Bioinformatics Proteomics courses - two courses covering Separation Sciences & Mass Spectrometry for Proteomics 2D gel electrophoresis tutorial by the Parasitology Group of the Aberystwyth University (Wales, UK) Indexes and Web services The World-2DPAGE Constellation - Promote and publish gel-based proteomics data through the ExPASy server 2D Hunt - Search 2-DE related sites on the Web 2DWG meta-database - Searchable catalog of 2D gel images found in Web databases Web 2D Electrophoretic Gel Databases FLICKER - Comparing images across the Internet CAROL - 2D Gel Matching program	Image analysis ImageMaster / Melanie - Software package for 2-D PAGE analysis MSight - A new vision in Mass Spectrometry Imaging GELLAB-II 2D Gel Analysis Software Web engine Make2D-DB II package - A package preparing the data and the programs necessary to build a federated 2-DE database on one's own web site. dbEngine - the WWW database engine at NCI/FCRDC Other Isoelfocus - multimedia computer-aided learning program on Isoelectric Focusing
Related journals	Related societies
Journal of Proteomics - Elsevier Proteomics journals list on the SPS web site Other links in the ExPASy links page	Swiss Proteomics Society Other related societies on the SPS web site

Related meetings
8th Siena meeting - From Genome to Proteome: Integration and proteome completion, Aug 31-Sep 4, 2008, Siena, Italy Other related conferences on the SPS web site SPS'07: Pushing the limits, December 3-5, 2007, Lausanne, Switzerland SPS'06: Applied Proteomics - Tips & Tricks, December 3-4, 2006, Yverdon-les-Bains, Switzerland SPS'05: Expanding Proteomics - New directions in Biology, Chemistry, Pharmaceutical Sciences and Medecine, December 5-7, 2005, Zurich, Switzerland SPS'04: Proteomics for Health - From development to application, December 6-8, 2004, Bern, Switzerland SPS'03: Understanding biological systems through proteomics, December 2-4, 2003, Basel, Switzerland SPS'02: Applied Proteomics, December 3-5, 2002, Lausanne, Switzerland SPS'01: Functional Proteomics, 1st Scientific Meeting of the Swiss Proteomics Society Siena meeting'2006 : Scientific program, Posters Siena meeting'2004 : Scientific program Siena meeting'2002 : Scientific program, list of attendees Siena meeting'2000 : Scientific program, list of attendees Siena meeting'98 : scientific program, list of attendees, social pictures List of attendees to the Siena meeting'96 List of attendees to the Siena meeting'94

Related meetings