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PROSITE documentation PDOC00493

Bacterial ring hydroxylating dioxygenases alpha-subunit signature

Description:

Bacterial ring hydroxylating dioxygenases are multicomponent enzymatic complexes composed of a hydroxylase component and an electron transfer component. The hydroxylase component is itself composed of two subunits: an α-subunit of about 50 Kd, and a β-subunit of about 20 Kd. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit.

The α-subunit of hydroxylase components are evolutionary related [1]. The currently known members of this family are listed below.

The α-subunit of the hydroxylase components bind both a 2Fe-2S type iron-sulfur center and an iron atom. There is, in the N-terminal section of these proteins, a conserved region of 24 residues which contains two cysteines and two histidines which have been shown [2] to be involved in the binding of the iron-sulfur center. We have used this region has a signature pattern.

Expert(s) to contact by email:

Harayama S.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RING_HYDROXYL_ALPHA, PS00570Bacterial ring hydroxylating dioxygenases alpha-subunit signature  (PATTERN)
Consensus pattern: C - x - H - R - [GAR] - x(7,8) - [GEKVI] - [NERAQ] - x(4,5) - C - x - [FY] - H
The 2 C's and the 2 H's are 2Fe-2S ligands
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
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Matching PDB structures: 1EG9 1NDO 1O7G 1O7H ... [ALL]

References:

1 AuthorsNeidle E.L., Hartnett C., Ornston L.N., Bairoch A., Rekik M., Harayama S.
TitleNucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases.
SourceJ. Bacteriol. 173:5385-5395(1991).
PubMed ID1885518
2 AuthorsKauppi B., Lee K., Carredano E., Parales R.E., Gibson D.T., Eklund H., Ramaswamy S.
TitleStructure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
SourceStructure 6:571-586(1998).
PubMed ID9634695

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