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PROSITE documentation PDOC00684

Indoleamine 2,3-dioxygenase signatures

Description:

Indoleamine 2,3-dioxygenase (EC 1.13.11.42) (IDO) [1] is an enzyme responsible for the conversion of tryptophan and other indole derivatives to kynurenines. In mammals, IDO is induced by interferon-γ (IFN-γ) and responsible for some of its anti-proliferative effects. The degradative action of IDO on tryptophan leads to cell death by starvation of this essential and relatively scarce amino acid. IDO is a heme-containing enzyme of about 400 amino acids.

Other proteins that are evolutionarily related to IDO are:

As a signature for the IDO family, we selected two conserved regions. The first is located in the central section and is rich in glycine and serine residues; the second is located in the second third of the sequence and contains a conserved histidine that could serve as a proximal ligand to the heme iron.

Last update:

May 2004 / Text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

IDO_1, PS00876Indoleamine 2,3-dioxygenase signature 1  (PATTERN)
Consensus pattern: G - G - S - [AN] - [GA] - Q - S - S - x(2) - Q
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 1.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00876
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00876
Scan Swiss-Prot/TrEMBL entries against PS00876
view ligand binding statistics
Matching PDB structures: 2D0T 2D0U [ALL]
IDO_2, PS00877Indoleamine 2,3-dioxygenase signature 2  (PATTERN)
Consensus pattern: [FY] - L - [DQ] - [DE] - [LIVM] - x(2) - Y - M - x(3) - H - [KR]
The H is a heme ligand
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00877
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00877
Scan Swiss-Prot/TrEMBL entries against PS00877
view ligand binding statistics
Matching PDB structures: 2D0T 2D0U [ALL]

References:

1 AuthorsTaylor M.W., Feng G.S.
TitleRelationship between interferon-gamma, indoleamine 2,3-dioxygenase, and tryptophan catabolism.
SourceFASEB J. 5:2516-2522(1991).
PubMed ID1907934
2 AuthorsSuzuki T.
TitleAbalone myoglobins evolved from indoleamine dioxygenase: the cDNA-derived amino acid sequence of myoglobin from Nordotis madaka.
SourceJ. Protein Chem. 13:9-13(1994).
PubMed ID8011076

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