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Entry: PS00436

General information about the entry
Entry namePEROXIDASE_2
Accession numberPS00436
Entry typePATTERN
DateMAY-1991 (CREATED); DEC-2004 (DATA UPDATE); OCT-2008 (INFO UPDATE).
PROSITE DocumentationPDOC00394
Associated ProRulePRU10012
Name and characterization of the entry
DescriptionPeroxidases active site signature.
Pattern[SGATV]-{D}-x(2)-[LIVMA]-R-[LIVMA]-x-[FW]-H-{V}-[SAC].
Numerical results
  • UniProtKB/Swiss-Prot release number: 56.4, total number of sequence entries in that release: 400771.
  • Total number of hits in UniProtKB/Swiss-Prot: 176 hits in 176 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 162 hits in 162 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 14 hits in 14 different sequences
  • Number of known missed hits: 50
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 29
  • Precision (true hits / (true hits + false positives)): 92.05 %
  • Recall (true hits / (true hits + false negatives)): 76.42 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 9,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
APX1_ARATH  (Q05431), APX1_ORYSI  (A2XFC7), APX1_ORYSJ  (Q10N21), 
APX1_PEA    (P48534), APX2_ARATH  (Q1PER6), APX2_ORYSJ  (Q9FE01), 
APX3_ARATH  (Q42564), APX3_ORYSI  (Q01MI9), APX3_ORYSJ  (Q0JEQ2), 
APX4_ORYSJ  (Q6ZJJ1), APX5_ARATH  (Q7XZP5), APX6_ARATH  (Q8GY91), 
CATA1_MAGGR (A4R5S9), CATA1_MYCFO (O08404), CATA1_MYCS2 (A0R609), 
CATA2_MAGGR (A4QUT2), CATA2_MYCFO (O08405), CATA2_MYCS2 (A0QXX7), 
CATA2_NEUCR (Q8X182), CATA_ARCFU  (O28050), CATA_BACST  (P14412), 
CATA_BURPS  (Q939D2), CATA_CAUCR  (O31066), CATA_ECOLI  (P13029), 
CATA_HALMA  (O59651), CATA_HALSA  (O73955), CATA_LEGPN  (Q9WXB9), 
CATA_MYCBO  (P46817), CATA_MYCIT  (Q04657), CATA_MYCSM  (P0C580), 
CATA_MYCTU  (Q08129), CATA_RHOCA  (P37743), CATA_SALTI  (Q8Z303), 
CATA_SALTY  (P17750), CATA_SYNE7  (Q31MN3), CATA_SYNY3  (P73911), 
CATA_YERPE  (Q9X6B0), CATB_STRCO  (Q9RJH9), CATB_STRRE  (O87864), 
CCPR2_ASPFU (Q4WLG9), CCPR2_CANAL (Q59X94), CCPR2_CRYNE (Q5KGE6), 
CCPR2_DEBHA (Q6BIB1), CCPR2_EMENI (Q5B1Z0), CCPR2_GIBZE (Q4HWQ2), 
CCPR2_USTMA (Q4PD66), CCPR2_YARLI (Q6CAB5), CCPR3_YARLI (Q6C7U1), 
CCPR_ASPFU  (Q4WPF8), CCPR_CANGA  (Q6FMG7), CCPR_CRYNE  (Q5KIK5), 
CCPR_CRYNV  (Q6URB0), CCPR_EMENI  (P0C0V3), CCPR_GIBZE  (Q4ING3), 
CCPR_KLULA  (Q6CW24), CCPR_NEUCR  (Q7SDV9), CCPR_USTMA  (Q4PBY6), 
CCPR_YARLI  (Q6C0Z6), CCPR_YEAST  (P00431), LIG2_PHACH  (P49012), 
LIG3_PHACH  (P21764), LIG4_PHACH  (P11542), LIG5_PHACH  (P11543), 
LIG6_PHACH  (P50622), LIG8_PHACH  (P06181), LIGA_PHACH  (P31837), 
LIGB_PHACH  (P31838), LIGC_TRAVE  (P20013), LIG_PHLRA   (P20010), 
MU180_SCHPO (Q9HDV1), PEM1_PHACH  (Q02567), PEM3_PHACH  (P78733), 
PEM4_PHACH  (P19136), PER10_ARATH (Q9FX85), PER11_ARATH (Q96519), 
PER12_ARATH (Q96520), PER13_ARATH (O49293), PER14_ARATH (Q9SI17), 
PER15_ARATH (Q9SI16), PER15_IPOBA (Q9LEH3), PER16_ARATH (Q96518), 
PER19_ARATH (O22959), PER1A_ARMRU (P00433), PER1B_ARMRU (P15232), 
PER1C_ARMRU (P15233), PER1_ARAHY  (P22195), PER1_ARATH  (Q96506), 
PER1_HORVU  (P27337), PER1_ORYSJ  (P37834), PER1_SOLLC  (P15003), 
PER1_SORBI  (P84516), PER1_WHEAT  (Q05855), PER1_ZINEL  (Q4W1I8), 
PER20_ARATH (Q9SLH7), PER22_ARATH (P24102), PER23_ARATH (O80912), 
PER25_ARATH (O80822), PER27_ARATH (Q43735), PER2_ARAHY  (P22196), 
PER2_ARMRU  (P17179), PER2_CUCSA  (P19135), PER2_ORYSI  (A2YPX3), 
PER2_ORYSJ  (Q0D3N0), PER2_SOLLC  (P15004), PER2_ZINEL  (Q4W1I9), 
PER30_ARATH (Q9LSY7), PER31_ARATH (Q9LHA7), PER32_ARATH (Q9LHB9), 
PER33_ARATH (P24101), PER34_ARATH (Q9SMU8), PER35_ARATH (Q96510), 
PER36_ARATH (Q9SD46), PER37_ARATH (Q9LDN9), PER38_ARATH (Q9LDA4), 
PER39_ARATH (Q9SUT2), PER3_ARATH  (O23044), PER3_ARMRU  (P17180), 
PER40_ARATH (O23474), PER41_ARATH (O23609), PER44_ARATH (Q93V93), 
PER45_ARATH (Q96522), PER47_ARATH (Q9SZB9), PER48_ARATH (O81755), 
PER49_ARATH (O23237), PER4_ARATH  (Q9LE15), PER52_ARATH (Q9FLC0), 
PER53_ARATH (Q42578), PER54_ARATH (Q9FG34), PER55_ARATH (Q96509), 
PER56_ARATH (Q9LXG3), PER57_ARATH (Q43729), PER58_ARATH (P59120), 
PER59_ARATH (Q39034), PER5_ARATH  (Q9M9Q9), PER60_ARATH (Q9FMR0), 
PER63_ARATH (Q9FL16), PER65_ARATH (Q9FJR1), PER67_ARATH (Q9LVL2), 
PER68_ARATH (Q9LVL1), PER69_ARATH (Q96511), PER6_ARATH  (O48677), 
PER70_ARATH (Q9FMI7), PER71_ARATH (Q43387), PER7_ARATH  (Q9SY33), 
PER8_ARATH  (Q9LNL0), PER9_ARATH  (Q96512), PERA2_ARMRU (P80679), 
PERA_IPOBA  (O04795), PERE5_ARMRU (P59121), PERN1_TOBAC (Q9XIV8), 
PERN_ARMRU  (Q42517), PERN_IPOBA  (O04796), PERP7_BRARA (P00434), 
PERX_NICSY  (Q02200), PERX_SOLTU  (P12437), PERX_TOBAC  (P11965), 
PER_ARTRA   (P28313), PER_COPC7   (A8NK72), PER_COPCI   (P28314), 
VPL1_PLEER  (Q9UR19), VPL2_PLEER  (O94753), VPS1_PLEER  (Q9UVP6)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
APX1_CHLVR  (Q539E5), APX4_ARATH  (P82281), APX4_SOLLC  (Q9THX6), 
APX5_ORYSJ  (P0C0L0), APX6_ORYSJ  (P0C0L1), APX7_ORYSJ  (Q7XJ02), 
APX8_ORYSJ  (Q69SV0), APXS_ARATH  (Q42592), APXT_ARATH  (Q42593), 
CCPR_CANAL  (Q5AEN1), CCPR_DEBHA  (Q6BKY9), PER17_ARATH (Q9SJZ2), 
PER18_ARATH (Q9SK52), PER21_ARATH (Q42580), PER24_ARATH (Q9ZV04), 
PER26_ARATH (O22862), PER28_ARATH (Q9SS67), PER29_ARATH (Q9LSP0), 
PER42_ARATH (Q9SB81), PER43_ARATH (Q9SZH2), PER46_ARATH (O81772), 
PER50_ARATH (Q43731), PER51_ARATH (Q9SZE7), PER61_ARATH (Q9FLV5), 
PER62_ARATH (Q9FKA4), PER64_ARATH (Q43872), PER66_ARATH (Q9LT91), 
PER72_ARATH (Q9FJZ9), PER73_ARATH (Q43873), PERC_AEDAE  (P82600), 
PERC_ANOGA  (Q7QH73), PERC_DROME  (Q9VEG6), PERE_HUMAN  (P11678), 
PERE_MOUSE  (P49290), PERL_BOVIN  (P80025), PERL_HUMAN  (P22079), 
PERM_HUMAN  (P05164), PERM_MOUSE  (P11247), PERO_DROME  (Q01603), 
PERT_CANFA  (Q8HYB7), PERT_HUMAN  (P07202), PERT_PIG    (P09933), 
PERT_RAT    (P14650), PXDNL_HUMAN (A1KZ92), PXDN_CAEBR  (A8WQH2), 
PXDN_CAEEL  (Q1ENI8), PXDN_DROME  (Q9VZZ4), PXDN_HUMAN  (Q92626), 
PXDN_MOUSE  (Q3UQ28), PXDN_XENTR  (A4IGL7)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
APX_PSEMZ   (P85940), LIGA_TRAVE  (P20011), LIGB_TRAVE  (P20012), 
PEM_IRPLA   (P83918), PER1_BETVE  (P85331), PER1_CATRO  (P85439), 
PER1_CYCRE  (P85346), PER1_VITVI  (P86014), PER2_BETVE  (P85333), 
PER2_CYCRE  (P85347), PER2_HORVU  (Q01548), PER3_BETVE  (P85334), 
PER3_CYCRE  (P85348), PER3_VITVI  (P86015), PER4_BETVE  (P85335), 
PER4_CYCRE  (P85349), PER5_BETVE  (P85351), PER5_CYCRE  (P85431), 
PER6_CYCRE  (P85432), PER7_CYCRE  (P85433), PER8_CYCRE  (P85434), 
PERA_ALOVR  (P84752), PERB_ALOVR  (P84753), PERC_BETVE  (P85332), 
PERE_PIG    (P80550), PERX_LUPPO  (P16147), PERX_WHEAT  (P15984), 
PER_CYNSC   (P84714), PER_GINBI   (P85317)
False positive hits (sequences which do not belong to the set under consideration):
CSDE1_HUMAN (O75534), CSDE1_MOUSE (Q91W50), CSDE1_RAT   (P18395), 
HEM1_CENSY  (A0RXF8), MNME_LEPCP  (B1Y0F6), MURD_DEIGD  (Q1J147), 
MUTS_SYNR3  (A5GQ22), PRP4_BOVIN  (Q3MHE2), PRP4_HUMAN  (O43172), 
PRP4_MOUSE  (Q9DAW6), PRP4_PONAB  (Q5NVD0), S41A3_HUMAN (Q96GZ6), 
S41A3_MOUSE (Q921R8), S41A3_RAT   (Q3SWT5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1A20; 1A2F; 1A2G; 1AA4; 1AC4; 1AC8; 1AEB; 1AED; 1AEE; 1AEF; 1AEG; 1AEH; 1AEJ; 1AEK; 1AEM; 1AEN; 1AEO; 1AEQ; 1AES; 1AET; 1AEU; 1AEV; 1APX; 1ARP; 1ARU; 1ARV; 1ARW; 1ARX; 1ARY; 1ATJ; 1B80; 1B82; 1B85; 1BEJ; 1BEK; 1BEM; 1BEP; 1BEQ; 1BES; 1BJ9; 1BQW; 1C8I; 1CCA; 1CCB; 1CCC; 1CCE; 1CCG; 1CCI; 1CCJ; 1CCK; 1CCL; 1CCP; 1CK6; 1CMP; 1CMQ; 1CMT; 1CMU; 1CPD; 1CPE; 1CPF; 1CPG; 1CYF; 1DCC; 1DS4; 1DSE; 1DSG; 1DSO; 1DSP; 1EBE; 1GW2; 1GWO; 1GWT; 1GWU; 1GX2; 1GZA; 1GZB; 1H3J; 1H55; 1H57; 1H58; 1H5A; 1H5C; 1H5D; 1H5E; 1H5F; 1H5G; 1H5H; 1H5I; 1H5J; 1H5K; 1H5L; 1H5M; 1HCH; 1HSR; 1ITK; 1JCI; 1JDR; 1KOK; 1KRJ; 1KXM; 1KXN; 1LGA; 1LLP; 1LY8; 1LY9; 1LYC; 1LYK; 1MN1; 1MN2; 1MNP; 1MWV; 1PA2; 1QGJ; 1QJR; 1QO4; 1QPA; 1RYC; 1S6V; 1S73; 1SBM; 1SCH; 1SDQ; 1SFZ; 1SJ2; 1SOG; 1STQ; 1U74; 1U75; 1UB2; 1W4W; 1W4Y; 1X7U; 1YYD; 1YYG; 1YZP; 1YZR; 1Z53; 1ZBY; 1ZBZ; 2ANZ; 2AQD; 2AS1; 2AS2; 2AS3; 2AS4; 2AS6; 2ATJ; 2B0Z; 2B10; 2B11; 2B12; 2B2O; 2B2Q; 2B2R; 2B2S; 2BCN; 2BOQ; 2CCA; 2CCD; 2CCP; 2CEP; 2CYP; 2DV1; 2E39; 2E3A; 2E3B; 2EUN; 2EUO; 2EUP; 2EUQ; 2EUR; 2EUS; 2EUT; 2EUU; 2GB8; 2IA8; 2ICV; 2PCB; 2PCC; 2RBT; 2RBU; 2RBV; 2RBW; 2RBX; 2RBY; 2RBZ; 2RC0; 2RC1; 2RC2; 2V23; 2V2E; 2VKA; 3ATJ; 3CCP; 3CCX; 4CCP; 4CCX; 6ATJ; 7ATJ;

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