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HAMAP: Deinococcus radiodurans complete proteome

General information

Species:  Deinococcus radiodurans
Species code: DEIRA
Taxonomy: Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus (TaxID: 1299) [NEWT/ NCBI]
Description: Gram-positive, red-pigmented, nonmotile bacterium. It is resistant to ionizing and UV radiation and hydrogen peroxide. It is the most radiation-resistant organism described to date.
Properties: Presence of flagella: No
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of DEIRA entries in the UniProt Knowledgebase: 3085 (491 in UniProtKB/Swiss-Prot + 2594 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 13939 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279 / R1
Genome structure:
• Chromosome I EMBL accession number AE000513 (circular; 2,648,638 bp) (download entry) (download Genome Reviews).
• Chromosome II EMBL accession number AE001825 (circular; 412,348 bp) (download entry) (download Genome Reviews).
• Plasmid megaplasmid MP1 EMBL accession number AE001826 (circular; 177,466 bp) (download entry) (download Genome Reviews).
• Plasmid CP1 EMBL accession number AE001827 (circular; 45,704 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=20036896; PubMed=10567266; [ NCBI , EBI , Israel , Japan ]
White O., Eisen J.A., Heidelberg J.F., Hickey E.K., Peterson J.D., Dodson R.J., Haft D.H., Gwinn M.L., Nelson W.C., Richardson D.L., Moffat K.S., Qin H., Jiang L., Pamphile W., Crosby M., Shen M., Vamathevan J.J., Lam P., McDonald L.A., Utterback T.R., Zalewski C., Makarova K.S., Aravind L., Daly M.J., Minton K.W., Fleischmann R.D., Ketchum K.A., Nelson K.E., Salzberg S.L., Smith H.O., Venter J.C., Fraser C.M. ;
"Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.";
Science 286:1571-1577(1999).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Deinococcus&GLspecies=radiodurans&GLstrain=R1
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid243230%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Drad_R1
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Deinococcus_radiodurans.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p65_Dei_radio
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gdr
 EBI Proteome Analysis page



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