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HAMAP: Pyrococcus horikoshii complete proteome

General information

Species:  Pyrococcus horikoshii
Species code: PYRHO
Taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus (TaxID: 53953) [NEWT/ NCBI]
Description: Hyperthermophile found in the hot waters of the Okinawa Trench. Can grow at high temperatures, favoring a temperature of 98 degrees Celsius.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 1
Number of inteins: 12 in 12 different sequences
Statistics: Number of PYRHO entries in the UniProt Knowledgebase: 2077 (456 in UniProtKB/Swiss-Prot + 1621 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    OT3
Genome structure
Chromosome EMBL accession number BA000001 (circular; 1,738,505 bp) (download entry) (download Genome Reviews).
References
[1] MEDLINE=98344137; PubMed=9679194; [ NCBI , EBI , Israel , Japan ]
Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H. ;
"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
DNA Res. 5:55-76(1998).
Web links
Official genome site(s):
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ot3_G1
Other web sites:
ARCHAIC db: http://www.aist.go.jp/RIODB/archaic/
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Archaea&GLgenus=Pyrococcus&GLspecies=horikoshii&GLstrain=OT3
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Phor_OT3
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Pyrococcus_horikoshii.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p207_Pyr_horik
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntph01
EBI Proteome Analysis page
Karyn's Genomes



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