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HAMAP: Fully sequenced bacteria that are known to interact with plants or perform photosynthesis

Definitions
Anoxygenic photosynthesis: Photosynthesis (the process which converts light energy into NAD(P)H, the reducing power of which is then used to reduce carbon dioxide to produce organic compounds) that does not produce molecular oxygen. Anoxygenic bacteria (purple sulfur and non-sulfur bacteria, green sulfur and non-sulfur bacteria and Heliobacteria) have only one photosynthetic reaction center.
Commensal: An organism living in an external relationship with another, in which one partner may gain more than the other. Some commensal bacteria become pathogenic under certain growth conditions.
Endophyte: An organism living within the tissues of a plant without causing it substantive harm.
Oxygenic photosynthesis: Photosynthesis (the process which converts light energy into ATP and NAD(P)H, the reducing power of which is then used to reduce carbon dioxide to produce organic compounds) that produces molecular oxygen as a by-product of water-splitting. Occurs in cyanobacteria, algae and plants and requires both reaction centers (photosystem I and II).
Pathogen: A disease producing bacterium. These can be intracellular or extracellular, obligate or not. Some organisms are only pathogenic under certain growth conditions.
Saprophyte: An organism living heterotrophically on dead organic matter.
Symbiont: An organism living in an intimate, external relationship with another, in which the mutual benefits usually outweigh the disadvantages.
[Anoxygenic photosynthesis ] [Oxygenic photosynthesis ] [Plant commensal ] [Plant endophyte ] [Plant pathogen ] [Plant saprophyte ] [Plant symbiont ]

Anoxygenic photosynthesis
BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
BRASO Bradyrhizobium sp. (strain ORS278)
CHLP8 Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327))
CHLCH Chlorobium chlorochromatii (strain CaD3)
CHLL2 Chlorobium limicola (strain DSM 245 / NBRC 103803)
CHLPB Chlorobium phaeobacteroides (strain BS1)
CHLPD Chlorobium phaeobacteroides (strain DSM 266)
CHLTE Chlorobium tepidum
CHLAA Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
CHLT3 Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
DINSH Dinoroseobacter shibae (strain DFL 12)
ERYLH Erythrobacter litoralis (strain HTCC2594)
HELMI Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)
JANSC Jannaschia sp. (strain CCS1)
METPP Methylibium petroleiphilum (strain PM1)
PELLD Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))
PELPB Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)
PROA2 Prosthecochloris aestuarii (strain DSM 271 / SK 413)
PROVI Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides (strain DSM 265))
RHOS4 Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
RHOS5 Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
RHOS1 Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
RHOPA Rhodopseudomonas palustris
RHOP5 Rhodopseudomonas palustris (strain BisA53)
RHOPB Rhodopseudomonas palustris (strain BisB18)
RHOPS Rhodopseudomonas palustris (strain BisB5)
RHOP2 Rhodopseudomonas palustris (strain HaA2)
RHOPT Rhodopseudomonas palustris (strain TIE-1)
RHORT Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
ROSCS Roseiflexus castenholzii (strain DSM 13941 / HLO8)
ROSS1 Roseiflexus sp. (strain RS-1)
ROSDO Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)



Oxygenic photosynthesis
ACAM1 Acaryochloris marina (strain MBIC 11017)
ANASP Anabaena sp. (strain PCC 7120)
ANAVT Anabaena variabilis (strain ATCC 29413 / PCC 7937)
CYAA5 Cyanothece (strain ATCC 51142)
GLOVI Gloeobacter violaceus
MICAN Microcystis aeruginosa (strain NIES-843)
NOSP7 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
PROMA Prochlorococcus marinus
PROMS Prochlorococcus marinus (strain AS9601)
PROM4 Prochlorococcus marinus (strain MIT 9211)
PROM2 Prochlorococcus marinus (strain MIT 9215)
PROM0 Prochlorococcus marinus (strain MIT 9301)
PROM3 Prochlorococcus marinus (strain MIT 9303)
PROM9 Prochlorococcus marinus (strain MIT 9312)
PROMM Prochlorococcus marinus (strain MIT 9313)
PROM5 Prochlorococcus marinus (strain MIT 9515)
PROM1 Prochlorococcus marinus (strain NATL1A)
PROMT Prochlorococcus marinus (strain NATL2A)
PROMP Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4)
SYNE7 Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
SYNEL Synechococcus elongatus (Thermosynechococcus elongatus)
SYNP6 Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
SYNP2 Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
SYNS3 Synechococcus sp. (strain CC9311)
SYNSC Synechococcus sp. (strain CC9605)
SYNS9 Synechococcus sp. (strain CC9902)
SYNJB Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
SYNJA Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime)
SYNR3 Synechococcus sp. (strain RCC307)
SYNPW Synechococcus sp. (strain WH7803)
SYNPX Synechococcus sp. (strain WH8102)
SYNY3 Synechocystis sp. (strain PCC 6803)
TRIEI Trichodesmium erythraeum (strain IMS101)



Plant commensal
BACA2 Bacillus amyloliquefaciens (strain FZB42)
ERWT9 Erwinia tasmaniensis (strain DSM 17950 / ET1/99)
PSEF5 Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)



Plant endophyte
AZOSB Azoarcus sp. (strain BH72)
BURPP Burkholderia phytofirmans (strain DSM 17436 / PsJN)
ENT38 Enterobacter sp. (strain 638)
GLUDA Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
METPB Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
PSEPW Pseudomonas putida (strain W619)
SERP5 Serratia proteamaculans (strain 568)



Plant pathogen
AGRT5 Agrobacterium tumefaciens (strain C58 / ATCC 33970)
AYWBP Aster yellows witches'-broom phytoplasma (strain AYWB)
CLAMS Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
ERWCT Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum)
LEIXX Leifsonia xyli subsp. xyli
ONYPE Onion yellows phytoplasma
PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14)
PSE14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)
PSEU2 Pseudomonas syringae pv. syringae (strain B728a)
PSESM Pseudomonas syringae pv. tomato
RALSO Ralstonia solanacearum (Pseudomonas solanacearum)
XANAC Xanthomonas axonopodis pv. citri (Citrus canker)
XANCP Xanthomonas campestris pv. campestris
XANC8 Xanthomonas campestris pv. campestris (strain 8004)
XANCB Xanthomonas campestris pv. campestris (strain B100)
XANC5 Xanthomonas campestris pv. vesicatoria (strain 85-10)
XANOR Xanthomonas oryzae pv. oryzae
XANOM Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
XANOP Xanthomonas oryzae pv. oryzae (strain PXO99A)
XYLFA Xylella fastidiosa
XYLFM Xylella fastidiosa (strain M12)
XYLF2 Xylella fastidiosa (strain M23)
XYLFT Xylella fastidiosa (strain Temecula1 / ATCC 700964)



Plant saprophyte
BURVG Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia cepacia (strain R1808))
CELJU Cellvibrio japonicus (strain Ueda107)
CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
CORGB Corynebacterium glutamicum (strain R)
FRAAA Frankia alni (strain ACN14a)
FRASN Frankia sp. (strain EAN1pec)
LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
PSEPF Pseudomonas fluorescens (strain PfO-1)
PSEPK Pseudomonas putida (strain KT2440)



Plant symbiont
AZOC5 Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
BRAJA Bradyrhizobium japonicum
BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
BRASO Bradyrhizobium sp. (strain ORS278)
BURP8 Burkholderia phymatum (strain DSM 17167 / STM815)
CUPTR Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424))
FRAAA Frankia alni (strain ACN14a)
FRASC Frankia sp. (strain CcI3)
FRASN Frankia sp. (strain EAN1pec)
METRJ Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
NOSP7 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
PSEU5 Pseudomonas stutzeri (strain A1501)
RHIEC Rhizobium etli (strain CFN 42 / ATCC 51251)
RHIE6 Rhizobium etli (strain CIAT 652)
RHIL3 Rhizobium leguminosarum bv. viciae (strain 3841)
RHILO Rhizobium loti (Mesorhizobium loti)
RHIME Rhizobium meliloti (Sinorhizobium meliloti)
SINMW Sinorhizobium medicae (strain WSM419) (Ensifer medicae)



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