NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.;
"Complete sequence of Sinorhizobium medicae WSM419 chromosome.";
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.

Comments

FUNCTION: Oxidative deamination of D-amino acids (By similarity).
CATALYTIC ACTIVITY: A D-amino acid + H₂O + acceptor = a 2-oxo acid + NH₃ + reduced acceptor.
COFACTOR: FAD (By similarity).
PATHWAY: Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1 .
SUBUNIT: Heterodimer of a small and a large subunit (By similarity).
SIMILARITY: Belongs to the dadA oxidoreductase family.

Copyright

Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.

Cross-references

Sequence databases

EMBL

CP000738; ABR60926.1; -; Genomic_DNA.

[EMBL / GenBank / DDBJ] [CoDingSequence]

RefSeq

YP_001327761.1; -.

3D structure databases

ModBase

A6UB96.

Ontologies

GO:0008718;	Molecular function: D-amino-acid dehydrogenase activity (inferred from electronic annotation from HAMAP).
GO:0006524;	Biological process: alanine catabolic process (inferred from electronic annotation from HAMAP).
QuickGo view.

Family and domain databases

HAMAP

MF_01202; -; 1.
PBIL [Tree]

InterPro

IPR006076; FAD-dep_OxRdtase.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.

Gene3D

G3DSA:3.40.50.720; NAD(P)-bd; 3.

Pfam

PF01266; DAO; 1.
Pfam graphical view of domain structure.

ProDom

PD000139; FAD_pyr_redox; 1.
[Domain structure / List of seq. sharing at least 1 domain]

BLOCKS

A6UB96.

Genome annotation databases

GeneID

5322953; -.

GenomeReviews

CP000738_GR; Smed_2093.

KEGG

smd:Smed_2093; -.

CMR

A6UB96; Smed_2093.

Other

ProtoNet

A6UB96.

UniRef

View cluster of proteins with at least 50% / 90% / 100% identity.

Keywords

Complete proteome; FAD; Flavoprotein; Oxidoreductase.

Features

Feature table viewer

`Key`	`From To`	`Length`	`Description`	`FTId`
`CHAIN`	`1 416`	`416`	`D-amino acid dehydrogenase small subunit.`	`PRO_1000066120`
`NP_BIND`	`3 17`	`15`	`FAD (Potential).`

Sequence information

Length: 416 AA [This is the length of the unprocessed precursor]

Molecular weight: 44828 Da [This is the MW of the unprocessed precursor]

CRC64: 77DDA7D0EB49BFD5 [This is a checksum on the sequence]

        10         20         30         40         50         60 
MKVIVLGAGI IGVTSAYQLS RAGHEVTVID RQPGPALETS FANAGEVSFG YCSPWAAPGI 

        70         80         90        100        110        120 
PMKALKWLFM QHAPLILRPR IDAAMLSWMA KMLSNCTSRR YAVNKSRMLR LADYSRTSLA 

       130        140        150        160        170        180 
ALREETAITY DERMQGTLQL FRTEAQLDAS AKDISALAAD GIPYEVLDRD GCIRAEPALG 

       190        200        210        220        230        240 
RVRDKIVGGL LTPQDETGDC FKFANALAGR AEKLGVCFDY GTEIRALEVD GGRVHGVVTS 

       250        260        270        280        290        300 
KGRRAADAVV VALGSYSPLL VRRFGIRLPV YPVKGYSLTI PIADASRAPV STVMDETYKI 

       310        320        330        340        350        360 
AITRLGDRIR VGGMAEISGY TNDLGIARRR TLEHSVMDLF PGGDAAKGSF WSGLRPMTPD 

       370        380        390        400        410 
GTPVIGPTRI AGLFLNTGHG TLGWTMSSGS ARVIADLVSD RKLEIDATDL AIARYG

A6UB96 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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	BLAST submission on ExPASy/SIB or at NCBI (USA)		Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
	ScanProsite, MotifScan		Submit a homology modeling request to SWISS-MODEL
	NPSA Sequence analysis tools