ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry P04216


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name THY1_HUMAN
Primary accession number P04216
Secondary accession numbers Q16008 Q9NSP1
Integrated into Swiss-Prot on March 20, 1987
Sequence was last modified on May 2, 2002 (Sequence version 2)
Annotations were last modified on    June 16, 2009 (Entry version 104)
Name and origin of the protein
Protein name Thy-1 membrane glycoprotein [Precursor]
Synonyms Thy-1 antigen
CDw90
CD90 antigen
Gene name
Name: THY1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1073/pnas.82.19.6657; PubMed=2864690 [NCBI, ExPASy, EBI, Israel, Japan]
Seki T., Spurr N., Obata F., Goyert S., Goodfellow P., Silver J.;
"The human Thy-1 gene: structure and chromosomal location.";
Proc. Natl. Acad. Sci. U.S.A. 82:6657-6661(1985).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain;
DOI=10.1006/bbrc.2000.3282; PubMed=10944468 [NCBI, ExPASy, EBI, Israel, Japan]
Ye Z., Connor J.R.;
"cDNA cloning by amplification of circularized first strand cDNAs reveals non-IRE-regulated iron-responsive mRNAs.";
Biochem. Biophys. Res. Commun. 275:223-227(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Amygdala;
DOI=10.1186/1471-2164-8-399; PubMed=17974005 [NCBI, ExPASy, EBI, Israel, Japan]
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Blocker H., Heubner D., Hoerlein A., Michel G., Wedler H., Kohrer K., Ottenwalder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Eye;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-55.
DOI=10.1084/jem.177.5.1331; PubMed=7683034 [NCBI, ExPASy, EBI, Israel, Japan]
Craig W., Kay R., Cutler R.L., Lansdorp P.M.;
"Expression of Thy-1 on human hematopoietic progenitor cells.";
J. Exp. Med. 177:1331-1342(1993).
[6]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-119, AND MASS SPECTROMETRY.
TISSUE=Liver;
DOI=10.1021/pr8008012; PubMed=19159218 [NCBI, ExPASy, EBI, Israel, Japan]
Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H.;
"Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.";
J. Proteome Res. 8:651-661(2009).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M11749; AAA61180.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF261093; AAG13904.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL161958; CAB82306.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC065559; AAH65559.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
S59749; AAB26353.2; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00022892; -.
PIR A02106; TDHU.
T47130; T47130.
RefSeq NP_006279.2; -.
UniGene Hs.644697
3D structure databases
ModBase P04216.
Enzyme and pathway databases
Pathway_Interaction_DB amb2_neutrophils_pathway; amb2 Integrin signaling.
il4_2pathway; IL4-mediated signaling events.
Organism-specific databases
GeneCards GC11M118795; -.
H-InvDB HIX0010195; -.
HGNC HGNC:11801; THY1.
GenAtlas THY1.
HPA HPA003733; -.
MIM 188230; gene. [NCBI / EBI]
PharmGKB PA36510; -.
Gene expression databases
ArrayExpress P04216; -.
Bgee P04216; -.
CleanEx HS_THY1; -.
GermOnline ENSG00000154096; Homo sapiens.
Ontologies
GO
GO:0005783; Cellular component: endoplasmic reticulum (inferred from direct assay from LIFEdb).
GO:0030426; Cellular component: growth cone (inferred from sequence or structural similarity from UniProtKB).
GO:0005887; Cellular component: integral to plasma membrane (traceable author statement from ProtInc).
GO:0045121; Cellular component: membrane raft (non-traceable author statement from UniProtKB).
GO:0034235; Molecular function: GPI anchor binding (inferred from sequence or structural similarity from UniProtKB).
GO:0005178; Molecular function: integrin binding (inferred from physical interaction from UniProtKB).
GO:0005100; Molecular function: Rho GTPase activator activity (inferred from sequence or structural similarity from UniProtKB).
GO:0001525; Biological process: angiogenesis (inferred from sequence or structural similarity from UniProtKB).
GO:0016337; Biological process: cell-cell adhesion (inferred from sequence or structural similarity from UniProtKB).
GO:0007010; Biological process: cytoskeleton organization (inferred from sequence or structural similarity from UniProtKB).
GO:0048041; Biological process: focal adhesion formation (inferred from sequence or structural similarity from UniProtKB).
GO:0050771; Biological process: negative regulation of axonogenesis (inferred from sequence or structural similarity from UniProtKB).
GO:0030336; Biological process: negative regulation of cell migration (inferred from sequence or structural similarity from UniProtKB).
GO:0006469; Biological process: negative regulation of protein kinase activity (inferred from sequence or structural similarity from UniProtKB).
GO:0050860; Biological process: negative regulation of T cell receptor signaling pathway (inferred from sequence or structural similarity from UniProtKB).
GO:0043547; Biological process: positive regulation of GTPase activity (inferred from sequence or structural similarity from UniProtKB).
GO:0051281; Biological process: positive regulation of release of sequestered calcium ion into cytosol (inferred from sequence or structural similarity from UniProtKB).
GO:0050870; Biological process: positive regulation of T cell activation (inferred from sequence or structural similarity from UniProtKB).
GO:0046549; Biological process: retinal cone cell development (inferred from sequence or structural similarity from UniProtKB).
GO:0050852; Biological process: T cell receptor signaling pathway (inferred from sequence or structural similarity from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR013151; Ig.
IPR007110; Ig-like.
IPR003599; Ig_sub.
Graphical view of domain structure.
Pfam PF00047; ig; 1.
Pfam graphical view of domain structure.
SMART SM00409; IG; 1.
SMART graphical view of domain structure.
PROSITE PS50835; IG_LIKE; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE P04216; -.
Genome annotation databases
Ensembl ENSG00000154096; Homo sapiens. [Contig view]
GeneID 7070; -.
KEGG hsa:7070; -.
Phylogenomic databases
HOGENOM P04216; -.
HOVERGEN P04216; -.
OMA P04216; LPIQYEF.
Other
NextBio 27645; -.
SOURCE THY1; Homo sapiens.
ProtoNet P04216.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Cell membrane; Disulfide bond; Glycoprotein; GPI-anchor; Immunoglobulin domain; Lipoprotein; Membrane; Pyrrolidone carboxylic acid; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    19  19      
CHAIN   20   130  111     Thy-1 membrane glycoprotein. PRO_0000014973
PROPEP   131   161  31     Removed in mature form (By similarity). PRO_0000014974
DOMAIN   20   126  107     Ig-like V-type. 
MOD_RES   20    20        Pyrrolidone carboxylic acid (By similarity). 
LIPID   130   130        GPI-anchor amidated cysteine (By similarity). 
CARBOHYD   42    42        N-linked (GlcNAc...). 
CARBOHYD   79    79        N-linked (GlcNAc...) (Potential). 
CARBOHYD   119   119        N-linked (GlcNAc...). 
CARBOHYD   139   139        N-linked (GlcNAc...). 
DISULFID   28   130        By similarity. 
DISULFID   38   104        By similarity. 
CONFLICT   54    55        LT -> AP (in Ref. 5). 
CONFLICT   85    85        N -> H (in Ref. 1; AAA61180). 
Sequence information
Length: 161 AA [This is the length of the unprocessed precursor] Molecular weight: 17935 Da [This is the MW of the unprocessed precursor] CRC64: 2B6796DA8EE7454B [This is a checksum on the sequence]
        10         20         30         40         50         60 
MNLAISIALL LTVLQVSRGQ KVTSLTACLV DQSLRLDCRH ENTSSSPIQY EFSLTRETKK 

        70         80         90        100        110        120 
HVLFGTVGVP EHTYRSRTNF TSKYNMKVLY LSAFTSKDEG TYTCALHHSG HSPPISSQNV 

       130        140        150        160 
TVLRDKLVKC EGISLLAQNT SWLLLLLLSL SLLQATDFMS L 

P04216 in FASTA format

View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ca flag CBR Canada Mirror sites: Australia  Brazil  China  Korea  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!