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UniProtKB/Swiss-Prot entry P04964


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDH_CORGL
Primary accession number P04964
Secondary accession numbers None
Integrated into Swiss-Prot on August 13, 1987
Sequence was last modified on August 13, 1987 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 67)
Name and origin of the protein
Protein name Meso-diaminopimelate D-dehydrogenase
Synonyms Meso-DAP dehydrogenase
EC 1.4.1.16
Gene name
Name: ddh
OrderedLocusNames: Cgl2617, cg2900
From
Corynebacterium glutamicum (Brevibacterium flavum) [TaxID: 1718] [HAMAP proteome]
Taxonomy Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=KY 10755;
DOI=10.1093/nar/15.9.3917; PubMed=3588313 [NCBI, ExPASy, EBI, Israel, Japan]
Ishino S., Mizukami T., Yamaguchi K., Katsumata R., Araki K.;
"Nucleotide sequence of the meso-diaminopimelate D-dehydrogenase gene from Corynebacterium glutamicum.";
Nucleic Acids Res. 15:3917-3917(1987).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025;
Nakagawa S.;
"Complete genomic sequence of Corynebacterium glutamicum ATCC 13032.";
Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025;
DOI=10.1016/S0168-1656(03)00154-8; PubMed=12948626 [NCBI, ExPASy, EBI, Israel, Japan]
Kalinowski J., Bathe B., Bartels D., Bischoff N., Bott M., Burkovski A., Dusch N., Eggeling L., Eikmanns B.J., Gaigalat L., Goesmann A., Hartmann M., Huthmacher K., Kraemer R., Linke B., McHardy A.C., Meyer F., Moeckel B., Pfefferle W., Puehler A., Rey D.A., Rueckert C., Rupp O., Sahm H., Wendisch V.F., Wiegraebe I., Tauch A.;
"The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.";
J. Biotechnol. 104:5-25(2003).
[4]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
STRAIN=KY 10755;
DOI=10.1021/bi961628i; PubMed=8885833 [NCBI, ExPASy, EBI, Israel, Japan]
Scapin G., Reddy S.G., Blanchard J.S.;
"Three-dimensional structure of meso-diaminopimelic acid dehydrogenase from Corynebacterium glutamicum.";
Biochemistry 35:13540-13551(1996).
[5]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
DOI=10.1021/bi9727949; PubMed=9521647 [NCBI, ExPASy, EBI, Israel, Japan]
Scapin G., Cirilli M., Reddy S.G., Gao Y., Vederas J.C., Blanchard J.S.;
"Substrate and inhibitor binding sites in Corynebacterium glutamicum diaminopimelate dehydrogenase.";
Biochemistry 37:3278-3285(1998).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Y00151; CAA68346.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BA000036; BAC00011.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BX927155; CAF21279.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S07384; S07384.
RefSeq NP_601818.2; -.
YP_226858.1; -.
3D structure databases
PDB
1DAP; X-ray; 2.20 A; A/B=1-320.[ExPASy / RCSB / EBI]
1F06; X-ray; 2.10 A; A/B=1-320.[ExPASy / RCSB / EBI]
2DAP; X-ray; 2.20 A; A=1-320.[ExPASy / RCSB / EBI]
3DAP; X-ray; 2.20 A; A/B=1-320.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1DAP; -.
1F06; -.
2DAP; -.
3DAP; -.
ModBase P04964.
Enzyme and pathway databases
BioCyc CGLU196627-1:CG2900-MON; -.
MetaCyc:MON-6621; -.
2D gel databases
World-2DPAGE 0001:P04964; -.
Family and domain databases
InterPro IPR010190; Diaminopimelate_DH.
IPR016040; NAD(P)-bd.
IPR000534; Semialdehyde_DHase_NAD-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
Pfam PF01118; Semialdhyde_dh; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF025648; DDH; 1.
TIGRFAMs TIGR01921; DAP-DH; 1.
BLOCKS P04964.
Genome annotation databases
GeneID 1020564; -.
3344238; -.
GenomeReviews BX927147_GR; cg2900.
BA000036_GR; Cgl2617.
KEGG cgb:cg2900; -.
cgl:NCgl2528; -.
Phylogenomic databases
HOGENOM P04964; -.
Other
LinkHub P04964; -.
Genome annotation databases
CMR P04964; Cgl2617.
Other
ProtoNet P04964.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Complete proteome; NADP; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   320  320     Meso-diaminopimelate D-dehydrogenase. PRO_0000079848
STRAND   4     9  6      
HELIX   13    22  10      
STRAND   26    38  13      
STRAND   46    48  3      
HELIX   49    55  7      
TURN   56    58  3      
STRAND   60    64  5      
TURN   68    70  3      
HELIX   71    79  9      
TURN   80    82  3      
STRAND   83    86  4      
HELIX   92    94  3      
HELIX   95   109  15      
STRAND   112   116  5      
TURN   119   122  4      
HELIX   123   134  12      
STRAND   135   137  3      
STRAND   139   144  6      
STRAND   146   148  3      
HELIX   150   157  8      
STRAND   164   171  8      
HELIX   173   180  8      
HELIX   189   192  4      
STRAND   193   200  8      
HELIX   203   205  3      
HELIX   206   214  9      
TURN   217   222  6      
STRAND   225   229  5      
HELIX   232   238  7      
STRAND   244   256  13      
STRAND   258   268  11      
HELIX   270   290  21      
STRAND   295   298  4      
HELIX   299   301  3      
HELIX   304   307  4      
HELIX   312   319  8      
Sequence information
Length: 320 AA [This is the length of the unprocessed precursor] Molecular weight: 35199 Da [This is the MW of the unprocessed precursor] CRC64: D29D3EB6DFDA35DE [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTNIRVAIVG YGNLGRSVEK LIAKQPDMDL VGIFSRRATL DTKTPVFDVA DVDKHADDVD 

        70         80         90        100        110        120 
VLFLCMGSAT DIPEQAPKFA QFACTVDTYD NHRDIPRHRQ VMNEAATAAG NVALVSTGWD 

       130        140        150        160        170        180 
PGMFSINRVY AAAVLAEHQQ HTFWGPGLSQ GHSDALRRIP GVQKAVQYTL PSEDALEKAR 

       190        200        210        220        230        240 
RGEAGDLTGK QTHKRQCFVV ADAADHERIE NDIRTMPDYF VGYEVEVNFI DEATFDSEHT 

       250        260        270        280        290        300 
GMPHGGHVIT TGDTGGFNHT VEYILKLDRN PDFTASSQIA FGRAAHRMKQ QGQSGAFTVL 

       310        320 
EVAPYLLSPE NLDDLIARDV 

P04964 in FASTA format

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