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UniProtKB/Swiss-Prot entry P24485


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CD53_RAT
Primary accession number P24485
Secondary accession numbers None
Integrated into Swiss-Prot on March 1, 1992
Sequence was last modified on January 23, 2007 (Sequence version 3)
Annotations were last modified on    July 22, 2008 (Entry version 58)
Name and origin of the protein
Protein name Leukocyte surface antigen CD53
Synonyms Cell surface glycoprotein CD53
Leukocyte antigen MRC OX-44
CD53 antigen
Gene name
Name: Cd53
Synonyms: Ox-44
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2017181 [NCBI, ExPASy, EBI, Israel, Japan]
Bellacosa A., Lazo P.A., Bear S.E., Tsichlis P.N.;
"The rat leukocyte antigen MRC OX-44 is a member of a new family of cell surface proteins which appear to be involved in growth regulation.";
Mol. Cell. Biol. 11:2864-2872(1991).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Kidney;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
PRELIMINARY PROTEIN SEQUENCE OF 2-30.
DOI=10.1084/jem.169.4.1497; PubMed=2466944 [NCBI, ExPASy, EBI, Israel, Japan]
Classon B.J., Williams A.F., Willis A.C., Seed B., Stamenkovic I.;
"The primary structure of the human leukocyte antigen CD37, a species homologue of the rat MRC OX-44 antigen.";
J. Exp. Med. 169:1497-1502(1989).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M57276; AAA41775.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC078900; AAH78900.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A39574; A39574.
RefSeq NP_036655.1; -.
UniGene Rn.31988
3D structure databases
ModBase P24485.
Organism-specific databases
RGD 2310; Cd53.
Gene expression databases
ArrayExpress P24485; -.
GermOnline ENSRNOG00000017874; Rattus norvegicus.
Family and domain databases
InterPro IPR000301; Transmem_4.
Graphical view of domain structure.
Pfam PF00335; Tetraspannin; 1.
Pfam graphical view of domain structure.
PRINTS PR00259; TMFOUR.
PROSITE PS00421; TM4_1; 1.
BLOCKS P24485.
Genome annotation databases
Ensembl ENSRNOG00000017874; Rattus norvegicus. [Contig view]
GeneID 24251; -.
KEGG rno:24251; -.
NMPDR fig|10116.3.peg.16810; -.
Phylogenomic databases
HOVERGEN P24485; -.
Other
ProtoNet P24485.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Direct protein sequencing; Glycoprotein; Membrane; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   219  218     Leukocyte surface antigen CD53. PRO_0000219214
TOPO_DOM   2    11  10     Cytoplasmic (Potential). 
TRANSMEM   12    32  21     Potential. 
TOPO_DOM   33    54  22     Extracellular (Potential). 
TRANSMEM   55    69  15     Potential. 
TOPO_DOM   70    80  11     Cytoplasmic (Potential). 
TRANSMEM   81   106  26     Potential. 
TOPO_DOM   107   181  75     Extracellular (Potential). 
TRANSMEM   182   206  25     Potential. 
TOPO_DOM   207   219  13     Cytoplasmic (Potential). 
CARBOHYD   119   119        N-linked (GlcNAc...) (Potential). 
CARBOHYD   129   129        N-linked (GlcNAc...) (Potential). 
CARBOHYD   148   148        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 219 AA [This is the length of the unprocessed precursor] Molecular weight: 24168 Da [This is the MW of the unprocessed precursor] CRC64: C73FC368311F172D [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGMSSLKLLK YVLFFFNFLF WVCGCCILGF GIHLLVQNTY GILFRNLPFL TLGNVLVIVG 

        70         80         90        100        110        120 
SIIMVVAFLG CMGSIKENKC LLMSFFVLLL LILLAEVTLA ILLFVYEKKI NTLVAEGLND 

       130        140        150        160        170        180 
SIQHYHSDNS TRMAWDFIQS QLQCCGVNGS SDWISGPPSS CPSGADVQGC YKKGQAWFHS 

       190        200        210 
NFLYIGIVTI CVCVIQVLGM SFALTLNCQI DKTSQALGL 

P24485 in FASTA format

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