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UniProtKB/Swiss-Prot entry P25858


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name G3PC_ARATH
Primary accession number P25858
Secondary accession numbers Q42352 Q9M8W8
Integrated into Swiss-Prot on May 1, 1992
Sequence was last modified on May 2, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 74)
Name and origin of the protein
Protein name Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Synonym EC 1.2.1.12
Gene name
Name: GAPC
OrderedLocusNames: At3g04120
ORFNames: T6K12.26
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
DOI=10.1016/0378-1119(91)90242-4; PubMed=1916285 [NCBI, ExPASy, EBI, Israel, Japan]
Shih M.-C., Heinrich P., Goodman H.M.;
"Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate-dehydrogenase from Arabidopsis thaliana.";
Gene 104:133-138(1991).
[2]
ERRATUM.
DOI=10.1016/0378-1119(92)90290-6; PubMed=1398114 [NCBI, ExPASy, EBI, Israel, Japan]
Shih M.-C., Heinrich P., Goodman H.M.;
Gene 119:317-319(1992).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 181-321.
STRAIN=cv. Columbia;
DOI=10.1046/j.1365-313X.1996.09010101.x; PubMed=8580968 [NCBI, ExPASy, EBI, Israel, Japan]
Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J., Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs.";
Plant J. 9:101-124(1996).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M64116; AAA32794.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M64119; AAA32796.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC016829; AAF26801.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY052267; AAK97737.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY060521; AAL31134.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY140084; AAM98225.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
F20074; CAA23391.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR JQ1287; JQ1287.
RefSeq NP_187062.1; -.
UniGene At.22963
3D structure databases
HSSP P00357; 4GPD. [HSSP ENTRY / PDB]
ModBase P25858.
Organism-specific databases
TAIR At3g04120; -.
Gene expression databases
ArrayExpress P25858; -.
GermOnline AT3G04120; Arabidopsis thaliana.
Family and domain databases
InterPro IPR000173; GlycerAld_3-P_DHase.
IPR006424; Glyceraldehyde-3-P_DHase_1.
Graphical view of domain structure.
PANTHER PTHR10836; GAP_DH; 1.
Pfam PF02800; Gp_dh_C; 1.
PF00044; Gp_dh_N; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000149; GAP_DH; 1.
PRINTS PR00078; G3PDHDRGNASE.
TIGRFAMs TIGR01534; GAPDH-I; 1.
PROSITE PS00071; GAPDH; 1.
BLOCKS P25858.
Genome annotation databases
GeneID 819567; -.
GenomeReviews BA000014_GR; AT3G04120.
KEGG ath:AT3G04120; -.
Other
ProtoNet P25858.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Glycolysis; NAD; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   338  338     Glyceraldehyde-3-phosphate dehydrogenase, cytosolic. PRO_0000145594
NP_BIND   15    16  2     NAD (By similarity). 
REGION   155   157  3     Glyceraldehyde 3-phosphate binding (By similarity). 
REGION   215   216  2     Glyceraldehyde 3-phosphate binding (By similarity). 
ACT_SITE   156   156        Nucleophile (By similarity). 
BINDING   37    37        NAD (By similarity). 
BINDING   84    84        NAD; via carbonyl oxygen (By similarity). 
BINDING   186   186        Glyceraldehyde 3-phosphate (By similarity). 
BINDING   238   238        Glyceraldehyde 3-phosphate (By similarity). 
BINDING   320   320        NAD (By similarity). 
SITE   183   183  1     Activates thiol group during catalysis (By similarity). 
CONFLICT   127   127        A -> E (in Ref. 1; AAA32794/AAA32796). 
CONFLICT   260   260        D -> E (in Ref. 1; AAA32794/AAA32796). 
Sequence information
Length: 338 AA [This is the length of the unprocessed precursor] Molecular weight: 36914 Da [This is the MW of the unprocessed precursor] CRC64: 4186F65E1F1EE96F [This is a checksum on the sequence]
        10         20         30         40         50         60 
MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH 

        70         80         90        100        110        120 
NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV ESTGVFTDKD KAAAHLKGGA 

       130        140        150        160        170        180 
KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT 

       190        200        210        220        230        240 
TVHSITATQK TVDGPSMKDW RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP 

       250        260        270        280        290        300 
TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD 

       310        320        330 
AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA 

P25858 in FASTA format

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