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UniProtKB/Swiss-Prot entry P28037


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name FTHFD_RAT
Primary accession number P28037
Secondary accession numbers None
Integrated into Swiss-Prot on August 1, 1992
Sequence was last modified on February 1, 1996 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 90)
Name and origin of the protein
Protein name 10-formyltetrahydrofolate dehydrogenase
Synonyms 10-FTHFDH
EC 1.5.1.6
Aldehyde dehydrogenase family 1 member L1
FBP-CI
Gene name
Name: Aldh1l1
Synonyms: Fthfd
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND PARTIAL PROTEIN SEQUENCE.
STRAIN=Sprague-Dawley;
TISSUE=Liver;
PubMed=1848231 [NCBI, ExPASy, EBI, Israel, Japan]
Cook R.J., Lloyd R.S., Wagner C.;
"Isolation and characterization of cDNA clones for rat liver 10-formyltetrahydrofolate dehydrogenase.";
J. Biol. Chem. 266:4965-4973(1991).
[2]
PROTEIN SEQUENCE OF N-TERMINUS, AND MUTAGENESIS OF ASP-142.
DOI=10.1074/jbc.274.50.35777; PubMed=10585460 [NCBI, ExPASy, EBI, Israel, Japan]
Krupenko S.A., Wagner C.;
"Aspartate 142 is involved in both hydrolase and dehydrogenase catalytic centers of 10-formyltetrahydrofolate dehydrogenase.";
J. Biol. Chem. 274:35777-35784(1999).
[3]
FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=3392008 [NCBI, ExPASy, EBI, Israel, Japan]
Case G.L., Kaisaki P.J., Steele R.D.;
"Resolution of rat liver 10-formyltetrahydrofolate dehydrogenase/hydrolase activities.";
J. Biol. Chem. 263:10204-10207(1988).
[4]
MUTAGENESIS OF CYS-707, FUNCTION, AND SUBUNIT.
DOI=10.1074/jbc.270.2.519; PubMed=7822273 [NCBI, ExPASy, EBI, Israel, Japan]
Krupenko S.A., Wagner C., Cook R.J.;
"Cysteine 707 is involved in the dehydrogenase activity site of rat 10-formyltetrahydrofolate dehydrogenase.";
J. Biol. Chem. 270:519-522(1995).
[5]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-354, AND MASS SPECTROMETRY.
TISSUE=Liver;
DOI=10.1021/pr0503073; PubMed=16396499 [NCBI, ExPASy, EBI, Israel, Japan]
Moser K., White F.M.;
"Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS.";
J. Proteome Res. 5:98-104(2006).
[6]
X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 1-309.
DOI=10.1074/jbc.M313934200; PubMed=14729668 [NCBI, ExPASy, EBI, Israel, Japan]
Chumanevich A.A., Krupenko S.A., Davies C.;
"The crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase: mechanism of hydrolysis and its interplay with the dehydrogenase domain.";
J. Biol. Chem. 279:14355-14364(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M59861; AAA70429.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A23709; A60560.
RefSeq NP_071992.1; -.
UniGene Rn.2328
3D structure databases
PDB
1S3I; X-ray; 2.30 A; A=1-309.[ExPASy / RCSB / EBI]
2O2P; X-ray; 1.70 A; A/B/C/D=397-902.[ExPASy / RCSB / EBI]
2O2Q; X-ray; 2.00 A; A/B/C/D=397-902.[ExPASy / RCSB / EBI]
2O2R; X-ray; 2.20 A; A/B/C/D=397-902.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1S3I; -.
2O2P; -.
2O2Q; -.
2O2R; -.
SMR P28037; 302-402.
ModBase P28037.
PTM databases
PhosphoSite P28037; -.
Organism-specific databases
RGD 621294; Fthfd.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from InterPro).
GO:0000036; Molecular function: acyl carrier activity (inferred from electronic annotation from InterPro).
GO:0048037; Molecular function: cofactor binding (inferred from electronic annotation from InterPro).
GO:0016155; Molecular function: formyltetrahydrofolate dehydrogenase activity (inferred from electronic annotation from InterPro).
GO:0016742; Molecular function: hydroxymethyl-, formyl- and related transferase activity (inferred from electronic annotation from InterPro).
GO:0009258; Biological process: 10-formyltetrahydrofolate catabolic process (inferred from electronic annotation from InterPro).
GO:0009058; Biological process: biosynthetic process (inferred from electronic annotation from InterPro).
GO:0006730; Biological process: one-carbon compound metabolic process (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR011407; 10_FTHF_DHase.
IPR016160; Ald_DHase_CS.
IPR016162; Ald_DHase_N.
IPR015590; Aldehyde_DHase.
IPR005793; Formyl_trans_C.
IPR002376; Formyl_transf_N.
IPR001555; GART_AS.
IPR006163; Phsphopanteth_bd.
IPR006162; Ppantne_S.
Graphical view of domain structure.
Gene3D G3DSA:3.40.605.10; Aldehyde_dehydrogenase_N; 1.
G3DSA:3.10.25.10; Formyl_trans_C; 1.
G3DSA:3.40.50.170; Formyl_transf_N; 1.
PANTHER PTHR11699; Aldehyde_dehyd; 1.
Pfam PF00171; Aldedh; 1.
PF02911; Formyl_trans_C; 1.
PF00551; Formyl_trans_N; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF036489; 10-FTHFDH; 1.
PROSITE PS50075; ACP_DOMAIN; 1.
PS00070; ALDEHYDE_DEHYDR_CYS; 1.
PS00687; ALDEHYDE_DEHYDR_GLU; 1.
PS00373; GART; 1.
PS00012; PHOSPHOPANTETHEINE; FALSE_NEG.
PROSITE graphical view of domain structure (profiles).
ProtoNet P28037.
Genome annotation databases
GeneID 64392; -.
KEGG rno:64392; -.
Phylogenomic databases
HOVERGEN P28037; -.
Other
NextBio 613150; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Direct protein sequencing; NADP; One-carbon metabolism; Oxidoreductase; Phosphopantetheine; Phosphoprotein.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   902  902     10-formyltetrahydrofolate dehydrogenase. PRO_0000199422
DOMAIN   323   392  70     Acyl carrier. 
REGION   1   203  203     GART. 
REGION   417   902  486     Aldehyde dehydrogenase. 
ACT_SITE   106   106        Proton donor (By similarity). 
ACT_SITE   673   673        By similarity. 
ACT_SITE   707   707        Probable. 
BINDING   354   354        Phosphopantetheine (covalent) (By similarity). 
SITE   142   142  1     Essential for catalytic activity (By similarity). 
MOD_RES   354   354        Phosphoserine. 
MUTAGEN   142   142        D->A,N,E,Q: Loss of hydrolase activity. 
MUTAGEN   707   707        C->A: Loss of dehydrogenase activity. No effect on hydrolase activity and NADP binding. 
STRAND   2     7  6      
HELIX   10    21  12      
STRAND   25    30  6      
HELIX   41    49  9      
STRAND   59    61  3      
HELIX   67    74  8      
STRAND   79    85  7      
HELIX   92    95  4      
STRAND   96    98  3      
STRAND   102   108  7      
TURN   110   113  4      
STRAND   114   116  3      
HELIX   118   124  7      
STRAND   128   136  9      
STRAND   139   142  4      
STRAND   146   153  8      
HELIX   160   166  7      
HELIX   168   185  18      
HELIX   206   209  4      
STRAND   213   215  3      
HELIX   217   225  9      
TURN   226   231  6      
STRAND   233   237  5      
STRAND   240   249  10      
STRAND   258   260  3      
STRAND   271   273  3      
STRAND   276   280  5      
STRAND   286   294  9      
STRAND   299   301  3      
HELIX   302   304  3      
STRAND   409   413  5      
STRAND   416   420  5      
STRAND   423   426  4      
STRAND   429   431  3      
HELIX   434   436  3      
STRAND   438   442  5      
TURN   444   446  3      
STRAND   449   454  6      
HELIX   458   473  16      
HELIX   476   478  3      
HELIX   482   498  17      
HELIX   500   511  12      
HELIX   515   520  6      
TURN   521   523  3      
HELIX   524   536  13      
HELIX   537   539  3      
STRAND   542   545  4      
STRAND   553   563  11      
STRAND   566   570  5      
STRAND   573   575  3      
HELIX   576   589  14      
STRAND   593   597  5      
HELIX   604   615  12      
STRAND   622   625  4      
HELIX   630   639  10      
STRAND   645   650  6      
HELIX   652   664  13      
STRAND   669   673  5      
STRAND   678   682  5      
HELIX   688   700  13      
HELIX   701   704  4      
STRAND   710   716  7      
HELIX   717   731  15      
HELIX   752   767  16      
STRAND   771   774  4      
STRAND   780   783  4      
STRAND   789   793  5      
HELIX   799   801  3      
STRAND   807   815  9      
HELIX   821   827  7      
STRAND   837   839  3      
HELIX   843   852  10      
STRAND   855   861  7      
HELIX   876   878  3      
HELIX   885   890  6      
Sequence information
Length: 902 AA [This is the length of the unprocessed precursor] Molecular weight: 99127 Da [This is the MW of the unprocessed precursor] CRC64: C8BB2418357FF6FE [This is a checksum on the sequence]
        10         20         30         40         50         60 
MKIAVIGQSL FGQEVYCQLR KEGHEVVGVF TIPDKDGKAD PLGLEAEKDG RAVFKFPRWR 

        70         80         90        100        110        120 
ARGQALPEVV AKYQALGAEL NVLPFCSQFI PMEVINAPRH GSIIYHPSLL PRHRGASAIN 

       130        140        150        160        170        180 
WTLIHGDKKG GFTIFWADDG LDTGDLLLQK ECEVLPDDTV STLYNRFLFP EGIKGMVQAV 

       190        200        210        220        230        240 
RLIAEGTAPR CPQSEEGATY EGIQKKETAK INWDQPAEAI HNWIRGNDKV PGAWTEACGQ 

       250        260        270        280        290        300 
KLTFFNSTLN TSGLSTQGEA LPIPGAHRPG VVTKAGLILF GNEHRMLLVK NIQLEDGKMM 

       310        320        330        340        350        360 
PASQFFKGSA SSDLELTEAE LATAEAVRSS WMRILPNVPE VEDSTDFFKS GAASVDVVRL 

       370        380        390        400        410        420 
VEEVKELCDG LELENEDVYM ATTFREFIQL LVRKLRGEDD ESECVINYVE RAVNKLTLQM 

       430        440        450        460        470        480 
PYQLFIGGEF VDAEGSKTYN TINPTDGSVI CQVSLAQVSD VDKAVAAAKE AFENGLWGKI 

       490        500        510        520        530        540 
NARDRGRLLY RLADVMEQHQ EELATIEALD RGAVYTLALK THVGMSIQTF RYFAGWCDKI 

       550        560        570        580        590        600 
QGATIPINQA RPNRNLTLTK KEPVGVCGIV IPWNYPLMML SWKTAACLAA GNTVVIKPAQ 

       610        620        630        640        650        660 
VTPLTALKFA ELTLKAGIPK GVVNILPGSG SLVGQRLSDH PDVRKIGFTG STEVGKHIMK 

       670        680        690        700        710        720 
SCALSNVKKV SLELGGKSPL IIFADCDLNK AVQMGMSSVF FNKGENCIAA GRLFVEESIH 

       730        740        750        760        770        780 
NQFVQKVVEE VEKMKIGNPL ERDTNHGPQN HEAHLRKLVE YCQRGVKEGA TLVCGGNQVP 

       790        800        810        820        830        840 
RPGFFFQPTV FTDVEDHMYI AKEESFGPIM IISRFADGDV DAVLSRANAT EFGLASGVFT 

       850        860        870        880        890        900 
RDINKALYVS DKLQAGTVFI NTYNKTDVAA PFGGFKQSGF GKDLGEAALN EYLRIKTVTF 


EY 

P28037 in FASTA format

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