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UniProtKB/Swiss-Prot entry P31040


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DHSA_HUMAN
Primary accession number P31040
Secondary accession numbers Q16395 Q9UMY5
Integrated into Swiss-Prot on July 1, 1993
Sequence was last modified on November 1, 1995 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 102)
Name and origin of the protein
Protein name Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Precursor]
Synonyms EC 1.3.5.1
Flavoprotein subunit of complex II
Fp
Gene name
Name: SDHA
Synonyms: SDH2, SDHF
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
PubMed=7798181 [NCBI, ExPASy, EBI, Israel, Japan]
Hirawake H., Wang H., Kuramochi T., Kojima S., Kita K.;
"Human complex II (succinate-ubiquinone oxidoreductase): cDNA cloning of the flavoprotein (Fp) subunit of liver mitochondria.";
J. Biochem. 116:221-227(1994).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Heart;
DOI=10.1016/0005-2728(94)90203-8; PubMed=8142412 [NCBI, ExPASy, EBI, Israel, Japan]
Morris A.A.M., Farnsworth L., Ackrell B.A.C., Turnbull D.M., Birch-MacHin M.A.;
"The cDNA sequence of the flavoprotein subunit of human heart succinate dehydrogenase.";
Biochim. Biophys. Acta 1185:125-128(1994).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT LS VAL-524.
DOI=10.1007/s004390051033; PubMed=10746566 [NCBI, ExPASy, EBI, Israel, Japan]
Parfait B., Chretien D., Roetig A., Marsac C., Munnich A., Rustin P.;
"Compound heterozygous mutations in the flavoprotein gene of the respiratory chain complex II in a patient with Leigh syndrome.";
Hum. Genet. 106:236-243(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Colon;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
PRELIMINARY PARTIAL NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Placenta;
Malcovati M., Marchetti L., Zanelli E., Tenchini M.L.;
"Cloning of the flavoprotein subunit of human succinate dehydrogenase.";
(In) Curti B., Ronchi S., Zanetti G. (eds.); Flavins and flavoproteins 1990, pp.727-730, Walter de Gruyter, Berlin (1991).
[6]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 546-562, AND VARIANT LS TRP-554.
DOI=10.1038/ng1095-144; PubMed=7550341 [NCBI, ExPASy, EBI, Israel, Japan]
Bourgeron T., Rustin P., Chretien D., Birch-MacHin M.A., Bourgeois M., Viegas-Pequignot E., Munnich A., Roetig A.;
"Mutation of a nuclear succinate dehydrogenase gene results in mitochondrial respiratory chain deficiency.";
Nat. Genet. 11:144-149(1995).
[7]
PROTEIN SEQUENCE OF 76-92 AND 398-418.
TISSUE=Adipocyte;
DOI=10.1042/BJ20040647; PubMed=15242332 [NCBI, ExPASy, EBI, Israel, Japan]
Aboulaich N., Vainonen J.P., Stralfors P., Vener A.V.;
"Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes.";
Biochem. J. 383:237-248(2004).
[8]
VARIANT COMPLEX II DEFICIENCY/LS GLU-555.
DOI=10.1002/ajmg.a.10202; PubMed=12794685 [NCBI, ExPASy, EBI, Israel, Japan]
Van Coster R., Seneca S., Smet J., Van Hecke R., Gerlo E., Devreese B., Van Beeumen J., Leroy J.G., De Meirleir L., Lissens W.;
"Homozygous Gly555Glu mutation in the nuclear-encoded 70 kDa flavoprotein gene causes instability of the respiratory chain complex II.";
Am. J. Med. Genet. A 120:13-18(2003).
Comments
  • FUNCTION: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  • CATALYTIC ACTIVITY: Succinate + ubiquinone = fumarate + ubiquinol.
  • COFACTOR: FAD.
  • PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
  • SUBUNIT: Component of complex II composed of four subunits: the flavoprotein (FP) SDHA, iron-sulfur protein (IP) SDHB, and a cytochrome b560 composed of SDHC and SDHD.
  • SUBCELLULAR LOCATION: Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.
  • DISEASE: Defects in SDHA are a cause of complex II mitochondrial respiratory chain deficiency [MIM:252011]; also known as succinate CoQ reductase deficiency. Defects of oxidative phosphorylation give rise to heterogeneous clinical symptoms ranging from isolated organ dysfunction to multisystem disorder. A deficiency of complex II represents a rare cause of mitochondrial encephalomyopathy, leukodystrophy, late-onset optic atrophy and ataxia, myopathy with exercise intolerance, and isolated cardiomyopathy.
  • DISEASE: Defects in SDHA are a cause of Leigh syndrome (LS) [MIM:256000]. LS is a severe disorder characterized by bilaterally symmetrical necrotic lesions in subcortical brain regions.
  • MISCELLANEOUS: The complex, present in mitochondria, can be degraded to form EC 1.3.99.1, which no longer reacts with ubiquinone.
  • SIMILARITY: Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  • SEQUENCE CAUTION:
    • Sequence=CAA37886.1; Type=Miscellaneous discrepancy; Note=Differs extensively from that shown
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=SDHA";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
D30648; BAA06332.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L21936; AAA20683.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171030; AAD51006.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171017; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171018; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171019; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171020; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171021; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171022; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171023; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171024; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171025; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171026; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171027; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171028; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF171029; AAD51006.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC001380; AAH01380.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X53943; CAA37886.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
S79641; AAB35332.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR JX0336; JX0336.
S21302; S21302.
RefSeq NP_004159.2; -.
UniGene Hs.379186
3D structure databases
HSSP P10444; 1NEK. [HSSP ENTRY / PDB]
SMR P31040; 54-664.
ModBase P31040.
Protein-protein interaction databases
IntAct P31040; -.
PTM databases
PhosphoSite P31040; -.
Enzyme and pathway databases
Reactome REACT_1046; Pyruvate metabolism and TCA cycle.
REACT_6305; Electron Transport Chain.
2D gel databases
REPRODUCTION-2DPAGE IPI00305166; -.
Organism-specific databases
H-InvDB HIX0004699; -.
HIX0024859; -.
HGNC HGNC:10680; SDHA.
GenAtlas SDHA.
MIM 252011; phenotype. [NCBI / EBI]
256000; phenotype. [NCBI / EBI]
600857; gene. [NCBI / EBI]
Orphanet 506; Leigh syndrome.
3208; Succinate CoQ reductase deficiency.
PharmGKB PA35605; -.
GeneCards P31040.
Gene expression databases
CleanEx HS_SDHA; -.
GermOnline ENSG00000073578; Homo sapiens.
Ontologies
GO
GO:0005749; Cellular component: mitochondrial respiratory chain complex II (traceable author statement from UniProtKB).
GO:0000104; Molecular function: succinate dehydrogenase activity (inferred from direct assay from UniProtKB).
GO:0055114; Biological process: oxidation reduction (inferred from direct assay from UniProtKB).
GO:0006099; Biological process: tricarboxylic acid cycle (traceable author statement from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR003953; FAD_bind2_N.
IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR003952; FRD_SDH_FAD_BS.
IPR004112; Fum_Rdtase/Succ_DHase_flav_C.
IPR001100; Pyr_nuc-diS_OxRdtase.
IPR011281; Succ_DHase_flav_su_fwd.
IPR014006; Succ_Dhase_frdA_Gneg.
Graphical view of domain structure.
Pfam PF00890; FAD_binding_2; 1.
PF02910; Succ_DH_flav_C; 1.
Pfam graphical view of domain structure.
PRINTS PR00368; FADPNR.
PR00411; PNDRDTASEI.
TIGRFAMs TIGR01816; sdhA_forward; 1.
TIGR01812; sdhA_frdA_Gneg; 1.
PROSITE PS00504; FRD_SDH_FAD_BINDING; 1.
BLOCKS P31040.
Proteomic databases
PeptideAtlas P31040; -.
Genome annotation databases
Ensembl ENSG00000073578; Homo sapiens. [Contig view]
GeneID 6389; -.
KEGG hsa:6389; -.
NMPDR fig|9606.3.peg.24978; -.
Phylogenomic databases
HOVERGEN P31040; -.
Other
DrugBank DB00139; Succinic acid.
LinkHub P31040; -.
SOURCE SDHA; Homo sapiens.
ProtoNet P31040.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Acetylation; Direct protein sequencing; Disease mutation; Electron transport; FAD; Flavoprotein; Leigh syndrome; Membrane; Mitochondrion; Mitochondrion inner membrane; Oxidoreductase; Phosphoprotein; Transit peptide; Transport; Tricarboxylic acid cycle.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    43  43     Mitochondrion (By similarity). 
CHAIN   44   664  621     Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial. PRO_0000010335
NP_BIND   91   106  16     FAD (By similarity). 
ACT_SITE   340   340        Proton acceptor (By similarity). 
BINDING   296   296        Substrate (By similarity). 
BINDING   308   308        Substrate (By similarity). 
BINDING   407   407        Substrate (By similarity). 
BINDING   451   451        Substrate (By similarity). 
MOD_RES   99    99        Tele-8alpha-FAD histidine (By similarity). 
MOD_RES   179   179        N6-acetyllysine (By similarity). 
MOD_RES   252   252        Phosphothreonine (By similarity). 
MOD_RES   485   485        N6-acetyllysine (By similarity). 
MOD_RES   498   498        N6-acetyllysine (By similarity). 
MOD_RES   538   538        N6-acetyllysine (By similarity). 
MOD_RES   547   547        N6-acetyllysine (By similarity). 
VARIANT   524   524  1     A -> V (in LS). VAR_016878 [3D]
VARIANT   554   554  1     R -> W (in LS). VAR_002449 [3D]
VARIANT   555   555  1     G -> E (in complex II deficiency and LS). VAR_016879 [3D]
CONFLICT   356   356        G -> D (in Ref. 3; AAD51006). 
CONFLICT   398   398        E -> D (in Ref. 3; AAD51006). 
CONFLICT   591   591        A -> T (in Ref. 3; AAD51006). 
CONFLICT   596   596        D -> G (in Ref. 3; AAD51006). 
CONFLICT   600   600        R -> Q (in Ref. 3; AAD51006). 
CONFLICT   629   629        Y -> F (in Ref. 2; AAA20683). 
CONFLICT   640   640        E -> G (in Ref. 3; AAD51006). 
CONFLICT   657   657        V -> I (in Ref. 2; AAA20683). 
Sequence information
Length: 664 AA [This is the length of the unprocessed precursor] Molecular weight: 72692 Da [This is the MW of the unprocessed precursor] CRC64: 180B664E3FFD0B34 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSGVRGLSRL LSARRLALAK AWPTVLQTGT RGFHFTVDGN KRASAKVSDS ISAQYPVVDH 

        70         80         90        100        110        120 
EFDAVVVGAG GAGLRAAFGL SEAGFNTACV TKLFPTRSHT VAAQGGINAA LGNMEEDNWR 

       130        140        150        160        170        180 
WHFYDTVKGS DWLGDQDAIH YMTEQAPAAV VELENYGMPF SRTEDGKIYQ RAFGGQSLKF 

       190        200        210        220        230        240 
GKGGQAHRCC CVADRTGHSL LHTLYGRSLR YDTSYFVEYF ALDLLMENGE CRGVIALCIE 

       250        260        270        280        290        300 
DGSIHRIRAK NTVVATGGYG RTYFSCTSAH TSTGDGTAMI TRAGLPCQDL EFVQFHPTGI 

       310        320        330        340        350        360 
YGAGCLITEG CRGEGGILIN SQGERFMERY APVAKDLASR DVVSRSMTLE IREGRGCGPE 

       370        380        390        400        410        420 
KDHVYLQLHH LPPEQLATRL PGISETAMIF AGVDVTKEPI PVLPTVHYNM GGIPTNYKGQ 

       430        440        450        460        470        480 
VLRHVNGQDQ IVPGLYACGE AACASVHGAN RLGANSLLDL VVFGRACALS IEESCRPGDK 

       490        500        510        520        530        540 
VPPIKPNAGE ESVMNLDKLR FADGSIRTSE LRLSMQKSMQ NHAAVFRVGS VLQEGCGKIS 

       550        560        570        580        590        600 
KLYGDLKHLK TFDRGMVWNT DLVETLELQN LMLCALQTIY GAEARKESRG AHAREDYKVR 

       610        620        630        640        650        660 
IDEYDYSKPI QGQQKKPFEE HWRKHTLSYV DVGTGKVTLE YRPVIDKTLN EADCATVPPA 


IRSY 

P31040 in FASTA format

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