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UniProtKB/Swiss-Prot entry P41310


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name COX1_DIDMA
Primary accession number P41310
Secondary accession numbers None
Integrated into Swiss-Prot on February 1, 1995
Sequence was last modified on February 1, 1995 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 55)
Name and origin of the protein
Protein name Cytochrome c oxidase subunit 1
Synonyms EC 1.9.3.1
Cytochrome c oxidase polypeptide I
Gene name
Name: MT-CO1
Synonyms: COI, COXI, MTCO1
From
Didelphis marsupialis virginiana (North American opossum) [TaxID: 9267] 
Encoded on Mitochondrion.
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Didelphis.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Liver;
PubMed=8056314 [NCBI, ExPASy, EBI, Israel, Japan]
Janke A., Feldmaier-Fuchs G., Thomas K., von Haeseler A., Paabo S.;
"The marsupial mitochondrial genome and the evolution of placental mammals.";
Genetics 137:243-256(1994).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Z29573; CAA82679.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S47872; S47872.
RefSeq NP_007097.1; -.
3D structure databases
HSSP P00396; 2OCC. [HSSP ENTRY / PDB]
SMR P41310; 1-511.
ModBase P41310.
Ontologies
GO
GO:0016021; Cellular component: integral to membrane (inferred from electronic annotation from InterPro).
GO:0005746; Cellular component: mitochondrial respiratory chain (inferred from electronic annotation from UniProtKB-KW).
GO:0005507; Molecular function: copper ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004129; Molecular function: cytochrome-c oxidase activity (inferred from electronic annotation from EC).
GO:0009055; Molecular function: electron carrier activity (inferred from electronic annotation from InterPro).
GO:0020037; Molecular function: heme binding (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0009060; Biological process: aerobic respiration (inferred from electronic annotation from InterPro).
GO:0022900; Biological process: electron transport chain (inferred from electronic annotation from UniProtKB-KW).
GO:0006810; Biological process: transport (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000883; COX1.
Graphical view of domain structure.
Gene3D G3DSA:1.20.210.10; COX1; 1.
PANTHER PTHR10422; COX1; 1.
Pfam PF00115; COX1; 1.
Pfam graphical view of domain structure.
PRINTS PR01165; CYCOXIDASEI.
PROSITE PS50855; COX1; 1.
PS00077; COX1_CUB; 1.
PROSITE graphical view of domain structure (profiles).
ProtoNet P41310.
Genome annotation databases
GeneID 807779; -.
Phylogenomic databases
HOVERGEN P41310; -.
Other
LinkHub P41310; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Copper; Electron transport; Heme; Iron; Membrane; Metal-binding; Mitochondrion; Mitochondrion inner membrane; Oxidoreductase; Respiratory chain; Transmembrane; Transport.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   513  513     Cytochrome c oxidase subunit 1. PRO_0000183322
TRANSMEM   17    37  21     Potential. 
TRANSMEM   56    76  21     Potential. 
TRANSMEM   102   122  21     Potential. 
TRANSMEM   145   165  21     Potential. 
TRANSMEM   183   203  21     Potential. 
TRANSMEM   234   254  21     Potential. 
TRANSMEM   268   288  21     Potential. 
TRANSMEM   310   330  21     Potential. 
TRANSMEM   338   358  21     Potential. 
TRANSMEM   380   400  21     Potential. 
TRANSMEM   412   432  21     Potential. 
TRANSMEM   456   476  21     Potential. 
METAL   61    61        Iron (heme A axial ligand) (Probable). 
METAL   240   240        Copper B (Probable). 
METAL   244   244        Copper B (Probable). 
METAL   290   290        Copper B (Probable). 
METAL   291   291        Copper B (Probable). 
METAL   376   376        Iron (heme A3 axial ligand) (Probable). 
METAL   378   378        Iron (heme A axial ligand) (Probable). 
CROSSLNK   240   244        1'-histidyl-3'-tyrosine (His-Tyr) (By similarity). 
Sequence information
Length: 513 AA [This is the length of the unprocessed precursor] Molecular weight: 57002 Da [This is the MW of the unprocessed precursor] CRC64: FFDAF8036663E8C0 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFINRWLFST NHKDIGTLYL LFGAWAGMVG TALSLLIRAE LGQPGTLIGD DQIYNVIVTA 

        70         80         90        100        110        120 
HAFIMIFFMV MPIMIGGFGN WLVPLMIGAP DMAFPRMNNM SFWLLPPSFL LLLASSTIEA 

       130        140        150        160        170        180 
GAGTGWTVYP PLAGNLAHAG ASVDLAIFSL HLAGISSILG AINFITTIIN MKPPAMSQYQ 

       190        200        210        220        230        240 
TPLFVWSVMI TAVLLLLSLP VLAAGITMLL TDRNLNTTFF DPAGGGDPIL YQHLFWFFGH 

       250        260        270        280        290        300 
PEVYILILPG FGMISHIVTY YSGKKEPFGY MGMVWAMMSI GFLGFIVWAH HMFTVGLDVD 

       310        320        330        340        350        360 
TRAYFTSATM IIAIPTGVKV FSWLATLHGG NIKWSPAMLW ALGFIFLFTI GGLTGIVLAN 

       370        380        390        400        410        420 
SSLDIVLHDT YYVVAHFHYV LSMGAVFAIM GGFVHWFPLF TGYMLNDMWA KIHFFIMFVG 

       430        440        450        460        470        480 
VNLTFFPQHF LGLSGMPRRY SDYPDAYTMW NVVSSIGSFI SLTAVILMVF IIWEAFASKR 

       490        500        510 
EVLDVELTTT NIEWLYGCPP PYHTFEQPVF IKA 

P41310 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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