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UniProtKB/Swiss-Prot entry P47052


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DHSX_YEAST
Primary accession number P47052
Secondary accession numbers None
Integrated into Swiss-Prot on February 1, 1996
Sequence was last modified on February 1, 1996 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 71)
Name and origin of the protein
Protein name Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial [Precursor]
Synonyms EC 1.3.5.1
Flavoprotein subunit of complex II
FP
SDH1b
Gene name
OrderedLocusNames: YJL045W
ORFNames: J1194
From
Saccharomyces cerevisiae (Baker's yeast) [TaxID: 4932] 
Taxonomy Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 96604 / S288c / FY1679;
PubMed=8641269 [NCBI, ExPASy, EBI, Israel, Japan]
Galibert F., Alexandraki D., Baur A., Boles E., Chalwatzis N., Chuat J.-C., Coster F., Cziepluch C., de Haan M., Domdey H., Durand P., Entian K.-D., Gatius M., Goffeau A., Grivell L.A., Hennemann A., Herbert C.J., Heumann K., Hilger F., Hollenberg C.P., Huang M.-E., Jacq C., Jauniaux J.-C., Katsoulou C., Kirchrath L., Kleine K., Kordes E., Koetter P., Liebl S., Louis E.J., Manus V., Mewes H.-W., Miosga T., Obermaier B., Perea J., Pohl T.M., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rasmussen S.W., Rose M., Rossau R., Schaaff-Gerstenschlaeger I., Smits P.H.M., Scarcez T., Soriano N., To Van D., Tzermia M., Van Broekhoven A., Vandenbol M., Wedler H., von Wettstein D., Wambutt R., Zagulski M., Zollner A., Karpfinger-Hartl L.;
"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.";
EMBO J. 15:2031-2049(1996).
[2]
FUNCTION.
DOI=10.1002/(SICI)1097-0061(199808)14:11<1001::AID-YEA304>3.0.CO;2-K; PubMed=9730279 [NCBI, ExPASy, EBI, Israel, Japan]
Colby G., Ishii Y., Tzagoloff A.;
"Suppression of sdh1 mutations by the SDH1b gene of Saccharomyces cerevisiae.";
Yeast 14:1001-1006(1998).
Comments
  • FUNCTION: Probable minor catalytic subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). Probably forms a catalytic dimer with SDH2. Electrons flow from succinate to the FAD bound to the catalytic subunit, and sequentially through the iron-sulfur clusters bound to SDH2 and enter the membrane dimer formed by SDH3 and SDH4.
  • CATALYTIC ACTIVITY: Succinate + ubiquinone = fumarate + ubiquinol.
  • COFACTOR: FAD.
  • PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
  • SUBUNIT: Component of complex II composed of four subunits: a flavoprotein (FP), an iron-sulfur protein (IP), and a cytochrome b composed of a large and a small subunit (By similarity).
  • SUBCELLULAR LOCATION: Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.
  • MISCELLANEOUS: In vitro, can complement a SDH1 disruption and leads to less than 15% of wild-type SDH reductase activity probably due to its lower expression level (compared to SDH1).
  • SIMILARITY: Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Z49320; CAA89336.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S56817; S56817.
RefSeq NP_012490.1; -.
3D structure databases
HSSP P10444; 1NEK. [HSSP ENTRY / PDB]
ModBase P47052.
Protein-protein interaction databases
DIP DIP:4262N; -.
IntAct P47052; -.
Organism-specific databases
CYGD YJL045w; -.
SGD S000003581; YJL045W.
Yeast-GFP YJL045W.
Gene expression databases
ArrayExpress P47052; -.
GermOnline YJL045W; Saccharomyces cerevisiae.
Ontologies
GO
GO:0005739; Cellular component: mitochondrion (inferred from direct assay from SGD).
GO:0008177; Molecular function: succinate dehydrogenase (ubiquinone) activity (inferred from genetic interaction from SGD).
GO:0045333; Biological process: cellular respiration (inferred from genetic interaction from SGD).
QuickGo view.
Family and domain databases
InterPro IPR003953; FAD_bind2_N.
IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR003952; FRD_SDH_FAD_BS.
IPR004112; Fum_Rdtase/Succ_DHase_flav_C.
IPR011281; Succ_DHase_flav_su_fwd.
IPR014006; Succ_Dhase_frdA_Gneg.
Graphical view of domain structure.
Pfam PF00890; FAD_binding_2; 1.
PF02910; Succ_DH_flav_C; 1.
Pfam graphical view of domain structure.
PRINTS PR00368; FADPNR.
TIGRFAMs TIGR01816; sdhA_forward; 1.
TIGR01812; sdhA_frdA_Gneg; 1.
PROSITE PS00504; FRD_SDH_FAD_BINDING; 1.
BLOCKS P47052.
Proteomic databases
PeptideAtlas P47052; -.
Genome annotation databases
Ensembl YJL045W; Saccharomyces cerevisiae. [Contig view]
GeneID 853405; -.
GenomeReviews Y13136_GR; YJL045W.
KEGG sce:YJL045W; -.
NMPDR fig|4932.3.peg.3464; -.
Phylogenomic databases
HOGENOM P47052; -.
Other
LinkHub P47052; -.
ProtoNet P47052.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Electron transport; FAD; Flavoprotein; Membrane; Mitochondrion; Mitochondrion inner membrane; Oxidoreductase; Transit peptide; Transport; Tricarboxylic acid cycle.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    25  25     Mitochondrion (Potential). 
CHAIN   26   634  609     Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial. PRO_0000010343
NP_BIND   76    91  16     FAD (By similarity). 
ACT_SITE   325   325        Proton acceptor (By similarity). 
BINDING   281   281        Substrate (By similarity). 
BINDING   293   293        Substrate (By similarity). 
BINDING   392   392        Substrate (By similarity). 
BINDING   438   438        Substrate (By similarity). 
MOD_RES   84    84        Tele-8alpha-FAD histidine (By similarity). 
Sequence information
Length: 634 AA [This is the length of the unprocessed precursor] Molecular weight: 69382 Da [This is the MW of the unprocessed precursor] CRC64: F00CD157AB9BF9C5 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLSLKKGITK SYILQRTFTS SSVVRQIGEV KSESKPPAKY HIIDHEYDCV VVGAGGAGLR 

        70         80         90        100        110        120 
AAFGLAEAGY KTACLSKLFP TRSHTVAAQG GINAALGNMH PDDWKSHMYD TVKGSDWLGD 

       130        140        150        160        170        180 
QDAIHYMTRE APKSVIELEH YGMPFSRTED GRIYQRAFGG QSKDFGKGGQ AYRTCAVADR 

       190        200        210        220        230        240 
TGHAMLHTLY GQALKNNTHF FIEYFAMDLL THNGEVVGVI AYNQEDGTIH RFRAHKTVIA 

       250        260        270        280        290        300 
TGGYGRAYFS CTSAHTCTGD GNAMVSRAGF PLEDLEFVQF HPSGIYGSGC LITEGARGEG 

       310        320        330        340        350        360 
GFLLNSEGER FMERYAPTAK DLASRDVVSR AITMEIRAGR GVGKNKDHIL LQLSHLPPEV 

       370        380        390        400        410        420 
LKERLPGISE TAAVFAGVDV TQEPIPVLPT VHYNMGGIPT KWTGEALTID EETGEDKVIP 

       430        440        450        460        470        480 
GLMACGEAAC VSVHGANRLG ANSLLDLVVF GRAVANTIAD TLQPGLPHKP LASNIGHESI 

       490        500        510        520        530        540 
ANLDKVRNAR GSLKTSQIRL NMQRTMQKDV SVFRTQDTLD EGVRNITEVD KTFEDVHVSD 

       550        560        570        580        590        600 
KSMIWNSDLV ETLELQNLLT CATQTAVSAS KRKESRGAHA REDYAKRDDV NWRKHTLSWQ 

       610        620        630 
KGTSTPVKIK YRNVIAHTLD ENECAPVPPA VRSY 

P47052 in FASTA format

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