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UniProtKB/Swiss-Prot entry P61429

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PHNS2_DESVH
Primary accession number P61429
Secondary accession numbers None
Integrated into Swiss-Prot on May 24, 2004
Sequence was last modified on May 24, 2004 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 40)
Name and origin of the protein
Protein name Periplasmic [NiFe] hydrogenase small subunit 2 [Precursor]
Synonyms EC 1.12.2.1
NiFe hydrogenlyase small chain 2
Gene name
Name: hynB2
Synonyms: hynB-2
OrderedLocusNames: DVU_2525
From
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) [TaxID: 882] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nbt959; PubMed=15077118 [NCBI, ExPASy, EBI, Israel, Japan]
Heidelberg J.F., Seshadri R., Haveman S.A., Hemme C.L., Paulsen I.T., Kolonay J.F., Eisen J.A., Ward N.L., Methe B.A., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Fouts D.E., Haft D.H., Selengut J., Peterson J.D., Davidsen T.M., Zafar N., Zhou L., Radune D., Dimitrov G., Hance M., Tran K., Khouri H.M., Gill J., Utterback T.R., Feldblyum T.V., Wall J.D., Voordouw G., Fraser C.M.;
"The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.";
Nat. Biotechnol. 22:554-559(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE017285; AAS96997.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_011737.1; -.
3D structure databases
ModBase P61429.
Enzyme and pathway databases
BioCyc DVUL882:DVU_2525-MON; -.
Ontologies
GO
GO:0009375; Cellular component: ferredoxin hydrogenase complex (inferred from electronic annotation from InterPro).
GO:0042597; Cellular component: periplasmic space (inferred from electronic annotation from UniProtKB-KW).
GO:0051538; Molecular function: 3 iron, 4 sulfur cluster binding (inferred from electronic annotation from UniProtKB-KW).
GO:0051539; Molecular function: 4 iron, 4 sulfur cluster binding (inferred from electronic annotation from UniProtKB-KW).
GO:0047806; Molecular function: cytochrome-c3 hydrogenase activity (inferred from electronic annotation from EC).
GO:0008901; Molecular function: ferredoxin hydrogenase activity (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0008137; Molecular function: NADH dehydrogenase (ubiquinone) activity (inferred from electronic annotation from InterPro).
GO:0006120; Biological process: mitochondrial electron transport, NADH to ubiquinone (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR001821; NiFe_hyd_ssu.
IPR013634; NiFe_hyd_ssu_N.
IPR006137; OxRdtase_q6.
IPR006311; Tat.
Graphical view of domain structure.
Pfam PF08425; NiFe_dehyd_N; 1.
PF01058; Oxidored_q6; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000310; NiFe_hyd_ssu; 1.
PRINTS PR00614; NIHGNASESMLL.
TIGRFAMs TIGR00391; hydA; 1.
TIGR01409; TAT_signal_seq; 1.
PROSITE PS51318; TAT; 1.
PROSITE graphical view of domain structure (profiles).
ProtoNet P61429.
Genome annotation databases
GeneID 2795615; -.
GenomeReviews AE017285_GR; DVU_2525.
KEGG dvu:DVU2525; -.
NMPDR fig|882.1.peg.2512; -.
TIGR DVU_2525; -.
Phylogenomic databases
HOGENOM P61429; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3Fe-4S; 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Metal-binding; Oxidoreductase; Periplasm; Signal.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
SIGNAL   1    49  49     Tat-type signal (Potential). 
CHAIN   50   324  275     Periplasmic [NiFe] hydrogenase small subunit 2. PRO_0000013418
METAL   67    67        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   70    70        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   164   164        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   200   200        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   237   237        Iron-sulfur 2 (4Fe-4S); via pros nitrogen (By similarity). 
METAL   240   240        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   265   265        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   271   271        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   280   280        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   298   298        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   301   301        Iron-sulfur 3 (3Fe-4S) (By similarity). 
Sequence information
Length: 324 AA [This is the length of the unprocessed precursor] Molecular weight: 34597 Da [This is the MW of the unprocessed precursor] CRC64: B725F966C4D57052 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSYTTRIPAK LLARQAEDGR MTRREFMKFC GIVAVAMGMG PGFAPAVAEA LQAKGRPSVV 

        70         80         90        100        110        120 
YMHGAECTGC TEGLLRSIDP FIDILMMEVI SLDYCETVMA AAGRAAHHAL EDALRNPAGY 

       130        140        150        160        170        180 
VCTIEGAIPT RKGGVYGQVG GETMLSLFSR VASGAKAVIA MGTCASFGGI QAAAPNPSGA 

       190        200        210        220        230        240 
IGVREALAPF GIQPINIAGC PPNPVNYIGT VVHLLTKGMP ELDSAGRPKM FYGTTVHDQC 

       250        260        270        280        290        300 
ERRKHFNADE FAPGFESKEA REGWCLHKLG CRGPYTYNNC PTAQFNQVNW PVRAGAPCIG 

       310        320 
CSEPGFWDAL APFNKDVRQK SDKA
P61429 in FASTA format

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