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UniProtKB/Swiss-Prot entry Q06327


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LOX1_ARATH
Primary accession number Q06327
Secondary accession numbers None
Integrated into Swiss-Prot on June 1, 1994
Sequence was last modified on June 1, 1994 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 77)
Name and origin of the protein
Protein name Lipoxygenase 1
Synonym EC 1.13.11.12
Gene name
Name: LOX1
OrderedLocusNames: At1g55020
ORFNames: F14C21.3, F14C21.54
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
TISSUE=Root;
DOI=10.1104/pp.101.2.441; PubMed=7506426 [NCBI, ExPASy, EBI, Israel, Japan]
Melan M.A., Dong X., Endara M.E., Davis K.R., Ausubel F.M., Peterman T.K.;
"An Arabidopsis thaliana lipoxygenase gene can be induced by pathogens, abscisic acid, and methyl jasmonate.";
Plant Physiol. 101:441-450(1993).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Landsberg erecta;
DOI=10.1016/0005-2760(94)90244-5; PubMed=8305494 [NCBI, ExPASy, EBI, Israel, Japan]
Melan M.A., Nemhauser J.M., Peterman T.K.;
"Structure and sequence of the Arabidopsis thaliana lipoxygenase 1 gene.";
Biochim. Biophys. Acta 1210:377-380(1994).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048500; PubMed=11130712 [NCBI, ExPASy, EBI, Israel, Japan]
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
L04637; AAA32827.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U01843; AAA17036.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC069144; AAG51123.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY093104; AAM13103.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT010358; AAQ56801.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR JQ2267; JQ2267.
RefSeq NP_175900.1; -.
UniGene At.19984
3D structure databases
HSSP P08170; 1FGT. [HSSP ENTRY / PDB]
ModBase Q06327.
Organism-specific databases
TAIR At1g55020; -.
Gene expression databases
ArrayExpress Q06327; -.
GermOnline AT1G55020; Arabidopsis thaliana.
Family and domain databases
InterPro IPR000907; LipOase.
IPR013819; LipOase_C.
IPR001024; LipOase_LH2.
IPR001246; LipOase_pln.
Graphical view of domain structure.
Gene3D G3DSA:2.60.60.20; Lipase_LipOase; 1.
PANTHER PTHR11771; LipOase; 1.
Pfam PF00305; Lipoxygenase; 1.
PF01477; PLAT; 1.
Pfam graphical view of domain structure.
PRINTS PR00087; LIPOXYGENASE.
PR00468; PLTLPOXGNASE.
SMART SM00308; LH2; 1.
SMART graphical view of domain structure.
PROSITE PS00711; LIPOXYGENASE_1; 1.
PS00081; LIPOXYGENASE_2; 1.
PS51393; LIPOXYGENASE_3; 1.
PS50095; PLAT; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q06327.
Genome annotation databases
GeneID 841944; -.
GenomeReviews CT485782_GR; AT1G55020.
KEGG ath:AT1G55020; -.
NMPDR fig|3702.1.peg.5025; -.
Other
ProtoNet Q06327.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Dioxygenase; Fatty acid biosynthesis; Iron; Lipid synthesis; Metal-binding; Oxidoreductase; Oxylipin biosynthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   859  859     Lipoxygenase 1. PRO_0000220703
DOMAIN   21   161  141     PLAT. 
DOMAIN   164   859  696     Lipoxygenase. 
METAL   519   519        Iron; catalytic (By similarity). 
METAL   524   524        Iron; catalytic (By similarity). 
METAL   711   711        Iron; catalytic (By similarity). 
METAL   715   715        Iron; catalytic (By similarity). 
METAL   859   859        Iron; via carboxylate; catalytic (By similarity). 
Sequence information
Length: 859 AA [This is the length of the unprocessed precursor] Molecular weight: 98045 Da [This is the MW of the unprocessed precursor] CRC64: 49378EBACD5FF579 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFGELRDLLT GGGNETTTKK VKGTVVLMKK NVLDFNDFNA SFLDRLHEFL GNKITLRLVS 

        70         80         90        100        110        120 
SDVTDSENGS KGKLGKAAHL EDWITTITSL TAGESAFKVT FDYETDFGYP GAFLIRNSHF 

       130        140        150        160        170        180 
SEFLLKSLTL EDVPGHGRVH YICNSWIYPA KHYTTDRVFF SNKTYLPHET PATLLKYREE 

       190        200        210        220        230        240 
ELVSLRGTGE GELKEWDRVY DYAYYNDLGV PPKNPRPVLG GTQEYPYPRR GRTGRKPTKE 

       250        260        270        280        290        300 
DPQTESRLPI TSSLDIYVPR DERFGHLKMS DFLAYALKAI AQFIQPALEA VFDDTPKEFD 

       310        320        330        340        350        360 
SFEDVLKIYE EGIDLPNQAL IDSIVKNIPL EMLKEIFRTD GQKFLKFPVP QVIKEDKTAW 

       370        380        390        400        410        420 
RTDEEFAREM LAGLNPVVIQ LLKEFPPKSK LDSESYGNQN STITKSHIEH NLDGLTVEEA 

       430        440        450        460        470        480 
LEKERLFILD HHDTLMPYLG RVNTTTTKTY ASRTLLFLKD DGTLKPLVIE LSLPHPNGDK 

       490        500        510        520        530        540 
FGAVSEVYTP GEGVYDSLWQ LAKAFVGVND SGNHQLISHW MQTHASIEPF VIATNRQLSV 

       550        560        570        580        590        600 
LHPVFKLLEP HFRDTMNINA LARQILINGG GIFEITVFPS KYAMEMSSFI YKNHWTFPDQ 

       610        620        630        640        650        660 
ALPAELKKRG MAVEDPEAPH GLRLRIKDYP YAVDGLEVWY AIESWVRDYI FLFYKIEEDI 

       670        680        690        700        710        720 
QTDTELQAWW KEVREEGHGD KKSEPWWPKM QTREELVESC TIIIWVASAL HAAVNFGQYP 

       730        740        750        760        770        780 
VAGYLPNRPT ISRQYMPKEN TPEFEELEKN PDKVFLKTIT AQLQTLLGIS LIEILSTHSS 

       790        800        810        820        830        840 
DEVYLGQRDS KEWAAEKEAL EAFEKFGEKV KEIEKNIDER NDDETLKNRT GLVKMPYTLL 

       850 
FPSSEGGVTG RGIPNSVSI 

Q06327 in FASTA format

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