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UniProtKB/Swiss-Prot entry Q10P67


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DAPB2_ORYSJ
Primary accession number Q10P67
Secondary accession numbers A3AG10 Q0DTI8 Q10P66
Integrated into Swiss-Prot on October 23, 2007
Sequence was last modified on August 22, 2006 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 19)
Name and origin of the protein
Protein name Probable dihydrodipicolinate reductase 2, chloroplastic [Precursor]
Synonyms DHPR 2
EC 1.3.1.26
Gene name
Name: DAPB2
OrderedLocusNames: Os03g0245100, LOC_Os03g14120
ORFNames: OsJ_009732
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.3869505; PubMed=16109971 [NCBI, ExPASy, EBI, Israel, Japan]
The rice chromosome 3 sequencing consortium;
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H.-I., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.;
"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.";
Genome Res. 15:1284-1291(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
DP000009; ABF94935.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DP000009; ABF94937.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008209; BAF11450.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000140; EAZ26249.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK102253; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
AK059346; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001049536.1; -.
UniGene Os.51228
3D structure databases
ModBase Q10P67.
Family and domain databases
InterPro IPR000846; DapB.
IPR011770; DapB_bac/pln.
IPR011859; DapB_pln.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR20836; DapB_bac/pln; 1.
Pfam PF05173; DapB_C; 1.
PF01113; DapB_N; 1.
Pfam graphical view of domain structure.
ProDom PD004105; DapB; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR02130; dapB_plant; 1.
BLOCKS Q10P67.
Genome annotation databases
GeneID 4332231; -.
KEGG osa:4332231; -.
Other
ProtoNet Q10P67.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Amino-acid biosynthesis; Chloroplast; Diaminopimelate biosynthesis; Lysine biosynthesis; NADP; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    32  32     Chloroplast (Potential). 
CHAIN   33   325  293     Probable dihydrodipicolinate reductase 2, chloroplastic. PRO_0000307186
COMPBIAS   121   124  4     Poly-Val. 
VAR_SEQ   179   203        Missing (in isoform 2). VSP_028630
Sequence information
Length: 325 AA [This is the length of the unprocessed precursor] Molecular weight: 35574 Da [This is the MW of the unprocessed precursor] CRC64: E1A4D87189A0585F [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLSLRPPCTL SPAPWRRRRT LHGAAGTPQR VSVAAPSAIV EAVSPPARFS FPILVNGCTG 

        70         80         90        100        110        120 
KMGLSVAEAV TSSGLHLVPI SFSSRDTLDR TVRVGHTDVR IYGPSAREDV LSSVIDEFPD 

       130        140        150        160        170        180 
VVVVDYTAPD SVNANAELYC KLGLPFVMGT TGGDRQLLYK SVQDSNNYAL ISPQMGKQVV 

       190        200        210        220        230        240 
AFLAAMEIMA EQFPGAFSGY HLEVLESHQA GKLDISGTAK AVIACFEKLG VSYDMNRMVK 

       250        260        270        280        290        300 
IRDPEQQLEM VGVPEEHIEG HAFHLYHLTS PDDSVSFEFQ HNVCGRSIYA EGSVDAAMFL 

       310        320 
HRKVRSNDSK RIYDMIDVLR EGSMR 

Q10P67 in FASTA format

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