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UniProtKB/Swiss-Prot entry Q40251


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name VDE_LACSA
Primary accession number Q40251
Secondary accession numbers None
Integrated into Swiss-Prot on January 23, 2007
Sequence was last modified on November 1, 1996 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 43)
Name and origin of the protein
Protein name Violaxanthin de-epoxidase, chloroplastic [Precursor]
Synonym EC 1.10.99.3
Gene name
Name: VDE1
From
Lactuca sativa (Garden lettuce) [TaxID: 4236] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactuca.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], DEVELOPMENTAL STAGE, AND FUNCTION.
STRAIN=cv. Romaine;
DOI=10.1073/pnas.93.13.6320; PubMed=8692813 [NCBI, ExPASy, EBI, Israel, Japan]
Bugos R.C., Yamamoto H.Y.;
"Molecular cloning of violaxanthin de-epoxidase from romaine lettuce and expression in Escherichia coli.";
Proc. Natl. Acad. Sci. U.S.A. 93:6320-6325(1996).
[2]
PROTEIN SEQUENCE OF 126-138; 265-272; 275-289 AND 341-353, AND BIOPHYSICOCHEMICAL PROPERTIES.
STRAIN=cv. Romaine;
DOI=10.1104/pp.110.2.697; PubMed=8742341 [NCBI, ExPASy, EBI, Israel, Japan]
Rockholm D.C., Yamamoto H.Y.;
"Violaxanthin de-epoxidase.";
Plant Physiol. 110:697-703(1996).
Comments
  • FUNCTION: Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light-harvesting protein complex of photosystem II.
  • CATALYTIC ACTIVITY: Violaxanthin + ascorbate = antheraxanthin + dehydroascorbate + H2O.
  • CATALYTIC ACTIVITY: Antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O.
  • ENZYME REGULATION: Inhibited by DTT.
  • BIOPHYSICOCHEMICAL PROPERTIES:
    Kinetic parameters:   KM=0.352 µM for violaxanthin;
    KM=4.4 mM for ascorbate;
    Note=reaction significantly slower in the absence of monogalactosyldiacylglyceride;
    pH dependence:   Optimum pH is 5.0;
  • SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Peripheral membrane protein; Lumenal side (By similarity).
  • DEVELOPMENTAL STAGE: Low constitutive expression in etiolated seedlings and immature yellow leaves. Higher expression in mature green leaves.
  • MISCELLANEOUS: Associates specificaly at acidic pH with monogalactosyldiacylglyceride (MGDG), the major lipid of thylakoids.
  • SIMILARITY: Belongs to the calycin superfamily. Lipocalin family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U31462; AAC49373.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
ModBase Q40251.
Enzyme and pathway databases
BioCyc MetaCyc:MON-2561; -.
Family and domain databases
InterPro IPR012674; Calycin.
IPR002345; Lipocalin.
IPR010788; VDE.
Graphical view of domain structure.
Gene3D G3DSA:2.40.128.20; Calycin; 1.
Pfam PF07137; VDE; 1.
Pfam graphical view of domain structure.
PROSITE PS00213; LIPOCALIN; 1.
BLOCKS Q40251.
Other
ProtoNet Q40251.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Chloroplast; Coiled coil; Direct protein sequencing; Membrane; Oxidoreductase; Plastid; Thylakoid; Transit peptide.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1     ?        Chloroplast (Potential). 
TRANSIT   ?   125        Thylakoid. 
CHAIN   126   473  348     Violaxanthin de-epoxidase, chloroplastic. PRO_5000144686
COILED   383   463  81     Potential. 
COMPBIAS   132   175  44     Cys-rich. 
Sequence information
Length: 473 AA [This is the length of the unprocessed precursor] Molecular weight: 54448 Da [This is the MW of the unprocessed precursor] CRC64: 1B22522DC2C62699 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALSLHTVFL CKEEALNLYA RSPCNERFHR SGQPPTNIIM MKIRSNNGYF NSFRLFTSYK 

        70         80         90        100        110        120 
TSSFSDSSHC KDKSQICSID TSFEEIQRFD LKRGMTLILE KQWRQFIQLA IVLVCTFVIV 

       130        140        150        160        170        180 
PRVDAVDALK TCACLLKECR IELAKCIANP SCAANVACLQ TCNNRPDETE CQIKCGDLFE 

       190        200        210        220        230        240 
NSVVDQFNEC AVSRKKCVPR KSDVGEFPVP DRNAVVQNFN MKDFSGKWYI TSGLNPTFDA 

       250        260        270        280        290        300 
FDCQLHEFHM ENDKLVGNLT WRIKTLDGGF FTRSAVQTFV QDPDLPGALY NHDNEFLHYQ 

       310        320        330        340        350        360 
DDWYILSSQI ENKPDDYIFV YYRGRNDAWD GYGGSVIYTR SPTLPESIIP NLQKAAKSVG 

       370        380        390        400        410        420 
RDFNNFITTD NSCGPEPPLV ERLEKTAEEG EKLLIKEAVE IEEEVEKEVE KVRDTEMTLF 

       430        440        450        460        470 
QRLLEGFKEL QQDEENFVRE LSKEEKEILN ELQMEATEVE KLFGRALPIR KLR 

Q40251 in FASTA format

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