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UniProtKB/Swiss-Prot entry Q498E0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TXD12_RAT
Primary accession number Q498E0
Secondary accession numbers None
Integrated into Swiss-Prot on May 2, 2006
Sequence was last modified on May 2, 2006 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 31)
Name and origin of the protein
Protein name Thioredoxin domain-containing protein 12 [Precursor]
Synonym EC 1.8.4.2
Gene name
Name: Txndc12
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Placenta;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BC100255; AAI00256.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Rn.5953
3D structure databases
SMR Q498E0; 28-161.
ModBase Q498E0.
Protein-protein interaction databases
IntAct Q498E0; -.
Organism-specific databases
RGD 1305960; Txndc12.
Gene expression databases
ArrayExpress Q498E0; -.
GermOnline ENSRNOG00000008090; Rattus norvegicus.
Ontologies
GO
GO:0005788; Cellular component: endoplasmic reticulum lumen (inferred from electronic annotation from UniProtKB-SubCell).
QuickGo view.
Family and domain databases
InterPro IPR000886; ER_targeting_sequence.
IPR006662; Thioredoxin-like.
IPR012335; Thioredoxin_fold.
Graphical view of domain structure.
Gene3D G3DSA:3.40.30.10; Thioredoxin_fold; 1.
PROSITE PS00014; ER_TARGET; 1.
PS00194; THIOREDOXIN_1; 1.
PS51352; THIOREDOXIN_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q498E0.
Genome annotation databases
Ensembl ENSRNOG00000008090; Rattus norvegicus. [Contig view]
NMPDR fig|10116.3.peg.23626; -.
Phylogenomic databases
HOVERGEN Q498E0; -.
Other
ProtoNet Q498E0.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Endoplasmic reticulum; Glycoprotein; Oxidoreductase; Redox-active center; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    24  24     By similarity. 
CHAIN   25   170  146     Thioredoxin domain-containing protein 12. PRO_0000233975
MOTIF   167   170  4     Prevents secretion from ER (Potential). 
CARBOHYD   128   128        N-linked (GlcNAc...) (Potential). 
DISULFID   64    67        Redox-active (Potential). 
Sequence information
Length: 170 AA [This is the length of the unprocessed precursor] Molecular weight: 19019 Da [This is the MW of the unprocessed precursor] CRC64: 444B6C9BE12C5E44 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSLRFGATCL LSFSFLLLIT SSDGRTGLGK GFGDHIHWRT LEDGKKEAAA SGLPLMVIIH 

        70         80         90        100        110        120 
KSWCGACKAL KPKFAESTEI SELSHNFVMV NLEDEEEPRD EDFSPDGGYI PRILFLDPSG 

       130        140        150        160        170 
KVRPEIINES GNPSYKYFYV SAEQVVQGMK EAQVRLTGDA FREKHFQDEL 

Q498E0 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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