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UniProtKB/Swiss-Prot entry Q53RB0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LOX4_ORYSJ
Primary accession number Q53RB0
Secondary accession numbers None
Integrated into Swiss-Prot on August 30, 2005
Sequence was last modified on May 24, 2005 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 28)
Name and origin of the protein
Protein name Probable lipoxygenase 4
Synonym EC 1.13.11.12
Gene name
OrderedLocusNames: Os03g0700700, LOC_Os03g49380
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.3869505; PubMed=16109971 [NCBI, ExPASy, EBI, Israel, Japan]
The rice chromosome 3 sequencing consortium;
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H.-I., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.;
"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.";
Genome Res. 15:1284-1291(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC093017; AAX95641.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK072689; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
3D structure databases
ModBase Q53RB0.
Organism-specific databases
Gramene Q53RB0; -.
Family and domain databases
InterPro IPR000907; LipOase.
IPR013819; LipOase_C.
IPR001024; LipOase_LH2.
IPR001246; LipOase_pln.
Graphical view of domain structure.
Gene3D G3DSA:2.60.60.20; Lipase_LipOase; 1.
PANTHER PTHR11771; LipOase; 1.
Pfam PF00305; Lipoxygenase; 1.
PF01477; PLAT; 1.
Pfam graphical view of domain structure.
PRINTS PR00087; LIPOXYGENASE.
PR00468; PLTLPOXGNASE.
SMART SM00308; LH2; 1.
SMART graphical view of domain structure.
PROSITE PS00711; LIPOXYGENASE_1; 1.
PS00081; LIPOXYGENASE_2; 1.
PS50095; PLAT; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q53RB0.
Other
ProtoNet Q53RB0.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Dioxygenase; Fatty acid biosynthesis; Iron; Lipid synthesis; Metal-binding; Oxidoreductase; Oxylipin biosynthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   877  877     Probable lipoxygenase 4. PRO_0000220710
DOMAIN   38   165  128     PLAT. 
METAL   528   528        Iron (catalytic) (By similarity). 
METAL   533   533        Iron (catalytic) (By similarity). 
METAL   719   719        Iron (catalytic) (By similarity). 
METAL   723   723        Iron (catalytic) (By similarity). 
METAL   877   877        Iron (via carboxylate) (catalytic) (By similarity). 
Sequence information
Length: 877 AA [This is the length of the unprocessed precursor] Molecular weight: 98698 Da [This is the MW of the unprocessed precursor] CRC64: 9B4EBB61CDCD9B7C [This is a checksum on the sequence]
        10         20         30         40         50         60 
MQVQGFFDRL TGRNKEAWKE GRIRGTAVLV KKDVLGLGDF HASLLDGVHN ILGHKEGVAF 

        70         80         90        100        110        120 
RLVSATARDP SNGGRGKLGK PAHLEELVVT MKSTAAGESV FRVAFEWDES QGIPGAVVVT 

       130        140        150        160        170        180 
NSNRSEFFLK TLTLDGVPGK GTVVFVANSW IYPADNYQYE RVFFANDTYL PSKMPAPLIP 

       190        200        210        220        230        240 
YRQEELNILR GDGKIGPYKE HDRIYRYDYY NDLGQPDKGS KLVRPVLGGS QELPYPRRGR 

       250        260        270        280        290        300 
TGRAPTKTDP NTESRLPLLD LNIYVPRDER FGHLKMSDFL GYSLKAIVEG VLPIIRTYVD 

       310        320        330        340        350        360 
TTPKEFDSFQ DIMELYEGGL KVANASALAE IKKRVPFELI KSLLPVAGDQ VLKLPLPHVI 

       370        380        390        400        410        420 
KEDKFAWRTD EEFAREMLAG VNPVMIKRLT NFPAKSTLDP NVYGDHTSKI TEAHIKHNME 

       430        440        450        460        470        480 
GLTVQNALKG NRLFILDHHD HFMPFLDKIN KLDGNFIYAS RTILLLKDDG TLKPLAIELS 

       490        500        510        520        530        540 
LPHPDGQQHG AVSKVYTPAN TGVESQIWQL AKAYASVNDS AWHQLISHWL NTHAVIEPFV 

       550        560        570        580        590        600 
IATNRQLSVV HPVHKLLSPH YRDTMNINAL ARQTLINADG IFEKTVFPGK YALEMSSVVY 

       610        620        630        640        650        660 
KNWKFTEQAL PVDLVKRGVA VPDPTSPYNV RLLIKDYPYA VDGLVIWWAI ERWVGEYLAI 

       670        680        690        700        710        720 
YYPNDGVLRG DEELQAWWKE VREVGHGDLK DQDWWPKMDT VQELTRACTI IIWIASALHA 

       730        740        750        760        770        780 
AVNFGQYPYA GFLPNRPTVS RRPMPEPGTE EYAKLERGGD EADLVFIHTI TSQFQTILGI 

       790        800        810        820        830        840 
SLIEILSKHS SDEVYLGQRD TPEWTSDAKA LDAFKRFGSR LVDIENRIKD MNGNSALKNR 

       850        860        870 
NGPVKMPYML LYPNTSDVTK EKGQGLTAMG IPNSISI 

Q53RB0 in FASTA format

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