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UniProtKB/Swiss-Prot entry Q55CC2


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DHSB_DICDI
Primary accession number Q55CC2
Secondary accession numbers None
Integrated into Swiss-Prot on April 8, 2008
Sequence was last modified on May 24, 2005 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 26)
Name and origin of the protein
Protein name Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Precursor]
Synonyms EC 1.3.5.1
Iron-sulfur subunit of complex II
Ip
Gene name
Name: sdhB
ORFNames: DDB_0231383
From
Dictyostelium discoideum (Slime mold) [TaxID: 44689] 
Taxonomy Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=AX4;
DOI=10.1038/nature03481; PubMed=15875012 [NCBI, ExPASy, EBI, Israel, Japan]
Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
"The genome of the social amoeba Dictyostelium discoideum.";
Nature 435:43-57(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AAFI02000005; EAL72410.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq XP_646559.1; -.
3D structure databases
ModBase Q55CC2.
Organism-specific databases
dictyBase DDB0231383; sdhB.
Family and domain databases
InterPro IPR006058; 2Fe2S_fd_BS.
IPR001450; 4Fe4S_Fe_S_bd.
IPR012675; b-grasp_ferredoxin-like.
IPR001041; Ferredoxin.
IPR012285; Fum_reductase_C.
IPR004489; Succ_DHase/fum_Rdtase_Fe-S.
Graphical view of domain structure.
Gene3D G3DSA:3.10.20.30; Ferredoxin_fold; 1.
G3DSA:1.10.1060.10; Fum_reductase_C; 1.
Pfam PF00111; Fer2; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00384; dhsB; 1.
PROSITE PS00197; 2FE2S_FER_1; 1.
PS51085; 2FE2S_FER_2; 1.
PS00198; 4FE4S_FER_1; 1.
PS51379; 4FE4S_FER_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q55CC2.
Genome annotation databases
GeneID 3397440; -.
KEGG ddi:DDB_0231383; -.
Other
ProtoNet Q55CC2.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
2Fe-2S; 3Fe-4S; 4Fe-4S; Complete proteome; Electron transport; Iron; Iron-sulfur; Membrane; Metal-binding; Mitochondrion; Mitochondrion inner membrane; Oxidoreductase; Transit peptide; Transport; Tricarboxylic acid cycle.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1    23  23     Mitochondrion (Potential). 
CHAIN   24   287  264     Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial. PRO_0000327719
DOMAIN   51   140  90     2Fe-2S ferredoxin-type. 
DOMAIN   186   216  31     4Fe-4S ferredoxin-type. 
METAL   101   101        Iron-sulfur 1 (2Fe-2S) (By similarity). 
METAL   106   106        Iron-sulfur 1 (2Fe-2S) (By similarity). 
METAL   109   109        Iron-sulfur 1 (2Fe-2S) (By similarity). 
METAL   121   121        Iron-sulfur 1 (2Fe-2S) (By similarity). 
METAL   196   196        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   199   199        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   202   202        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   206   206        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   257   257        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   263   263        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   267   267        Iron-sulfur 2 (4Fe-4S) (By similarity). 
BINDING   211   211        Ubiquinone; shared with DHSD (By similarity). 
Sequence information
Length: 287 AA [This is the length of the unprocessed precursor] Molecular weight: 32185 Da [This is the MW of the unprocessed precursor] CRC64: 86BF6C9A4980D0C4 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MISNVLKRAS VLARSNGIQS AFYTTTAKTE ASSSPQMKIK TAEKKDHFVN FQVYRYNEET 

        70         80         90        100        110        120 
TAKPYIQTYN INLKDCGPMV LDALLLIKNN IDPTLSFRRS CREGICGSCA MNLNGSNTLA 

       130        140        150        160        170        180 
CTKKITDCLS GDTVKVYPLP HMHVVRDLIP DLSHFYTQHK SIKPWLEPAV DVPRYNGKEI 

       190        200        210        220        230        240 
LQSKENRHKL DGLYECILCA CCSTSCPSYW WSEGGDGGYL GPAVLLQAYR WIADSRDSIQ 

       250        260        270        280 
KDRLAILSED QMKVYKCHTI MNCTAVCPKG LNPGKSIANI KYLLAHN 

Q55CC2 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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