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UniProtKB/Swiss-Prot entry Q87ND9

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NRFA_VIBPA
Primary accession number Q87ND9
Secondary accession numbers None
Integrated into Swiss-Prot on December 12, 2006
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 40)
Name and origin of the protein
Protein name Cytochrome c-552 [Precursor]
Synonyms EC 1.7.2.2
Ammonia-forming cytochrome c nitrite reductase
Cytochrome c nitrite reductase
Gene name
Name: nrfA
OrderedLocusNames: VP1929
From
Vibrio parahaemolyticus [TaxID: 670] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=RIMD 2210633 / Serotype O3:K6;
DOI=10.1016/S0140-6736(03)12659-1; PubMed=12620739 [NCBI, ExPASy, EBI, Israel, Japan]
Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.;
"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae.";
Lancet 361:743-749(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BA000031; BAC60192.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_798308.1; -.
3D structure databases
HSSP P32050; 1GU6. [HSSP ENTRY / PDB]
ModBase Q87ND9.
Enzyme and pathway databases
BioCyc VPAR223926:VP1929-MON; -.
Ontologies
GO
GO:0042597; Cellular component: periplasmic space (inferred from electronic annotation from HAMAP).
GO:0042279; Molecular function: nitrite reductase (cytochrome, ammonia-forming) activity (inferred from electronic annotation from HAMAP).
GO:0006807; Biological process: nitrogen compound metabolic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01182; -; 1.
PBIL [Tree]
InterPro IPR003321; Cyt_c552.
IPR017570; Cytc_552_NO2Rdtase_formate-dep.
IPR011031; Multihaem_cyt.
Graphical view of domain structure.
Pfam PF02335; Cytochrom_C552; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000243; Cyt_c552; 1.
PROSITE PS51008; MULTIHEME_CYTC; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q87ND9.
Genome annotation databases
GeneID 1189436; -.
GenomeReviews BA000031_GR; VP1929.
KEGG vpa:VP1929; -.
NMPDR fig|223926.1.peg.1929; -.
Phylogenomic databases
HOGENOM Q87ND9; -.
Genome annotation databases
CMR Q87ND9; VP1929.
Other
ProtoNet Q87ND9.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calcium; Complete proteome; Electron transport; Heme; Iron; Metal-binding; Oxidoreductase; Periplasm; Signal; Transport.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
SIGNAL   1    29  29     Potential. 
CHAIN   30   475  446     Cytochrome c-552. PRO_0000268982
METAL   92    92        Iron (heme 3 axial ligand) (By similarity). 
METAL   124   124        Iron (heme 1 axial ligand) (By similarity). 
METAL   162   162        Iron (heme 2 axial ligand) (By similarity). 
METAL   211   211        Iron (heme 3 axial ligand) (By similarity). 
METAL   213   213        Calcium (By similarity). 
METAL   214   214        Calcium; via carbonyl oxygen (By similarity). 
METAL   259   259        Calcium; via carbonyl oxygen (By similarity). 
METAL   261   261        Calcium (By similarity). 
METAL   273   273        Iron (heme 5 axial ligand) (By similarity). 
METAL   284   284        Iron (heme 4 axial ligand) (By similarity). 
METAL   299   299        Iron (heme 2 axial ligand) (By similarity). 
METAL   316   316        Iron (heme 5 axial ligand) (By similarity). 
METAL   391   391        Iron (heme 4 axial ligand) (By similarity). 
BINDING   120   120        Heme 1 (covalent) (By similarity). 
BINDING   123   123        Heme 1 (covalent) (By similarity). 
BINDING   158   158        Heme 2 (covalent) (By similarity). 
BINDING   161   161        Heme 2 (covalent) (By similarity). 
BINDING   207   207        Heme 3 (covalent) (By similarity). 
BINDING   210   210        Heme 3 (covalent) (By similarity). 
BINDING   214   214        Substrate (By similarity). 
BINDING   262   262        Substrate (By similarity). 
BINDING   280   280        Heme 4 (covalent) (By similarity). 
BINDING   283   283        Heme 4 (covalent) (By similarity). 
BINDING   312   312        Heme 5 (covalent) (By similarity). 
BINDING   315   315        Heme 5 (covalent) (By similarity). 
Sequence information
Length: 475 AA [This is the length of the unprocessed precursor] Molecular weight: 53262 Da [This is the MW of the unprocessed precursor] CRC64: 1BB4C5D421A0E797 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSIKHWMSAP IAVATLFASQ LLLAGSVLAA ENNDRLDPRN DAFEQKHPDQ YHSWKATSES 

        70         80         90        100        110        120 
KHIEDALSED PNMVILWAGY GFAKDYNKAR GHFYALDDVR QTLRTGAPAD ENSGPMPMAC 

       130        140        150        160        170        180 
WSCKSPDVAR VIEERGEDGY FSGKWARLGS EIVNPIGCSD CHDTRSEKFN QGEPELALTR 

       190        200        210        220        230        240 
PYVERAFDVI GKNFDDQSRL DKQASVCAQC HVEYYFTGPT KAVKFPWDMG TTVGDMEKYY 

       250        260        270        280        290        300 
DALDFKDWTH AVSKAPMLKA QHPGFETWRE GIHGKNKVVC VDCHMPKVTK ADGTVYTDHK 

       310        320        330        340        350        360 
VGNPFDRFED TCAQCHTQTK EQLRNIVSSR KALVLNMKLT AEKQIVAAHF EAGEAWKAGA 

       370        380        390        400        410        420 
TEEEMKPILQ DIRHAQWRWD YAIASHGVHM HAPEVALEVL GTAVDRAADA RTKLVRLLAT 

       430        440        450        460        470 
KGITEPVQIP DISTKAKAQE ALGMDMEKMN ADKKHFLDTV VPDWDKAAAE REATY
Q87ND9 in FASTA format

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