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UniProtKB/Swiss-Prot entry Q92947


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GCDH_HUMAN
Primary accession number Q92947
Secondary accession number O14719
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on February 1, 1997 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 93)
Name and origin of the protein
Protein name Glutaryl-CoA dehydrogenase, mitochondrial [Precursor]
Synonyms GCD
EC 1.3.99.7
Gene name
Name: GCDH
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
PubMed=1438360 [NCBI, ExPASy, EBI, Israel, Japan]
Goodman S.I., Kratz L.E., Frerman F.E.;
"Pork and human cDNAs encoding glutaryl-CoA dehydrogenase.";
Prog. Clin. Biol. Res. 375:169-173(1992).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS LONG AND SHORT), AND VARIANT GA-I HIS-295.
TISSUE=Liver;
DOI=10.1093/hmg/4.9.1493; PubMed=8541831 [NCBI, ExPASy, EBI, Israel, Japan]
Goodman S.I., Kratz L.E., Digiulio K.A., Biery B.J., Goodman K.E., Isaya G., Frerman F.E.;
"Cloning of glutaryl-CoA dehydrogenase cDNA, and expression of wild type and mutant enzymes in Escherichia coli.";
Hum. Mol. Genet. 4:1493-1498(1995).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS GA-I.
DOI=10.1007/s004390050720; PubMed=9600243 [NCBI, ExPASy, EBI, Israel, Japan]
Schwartz M., Christensen E., Superti-Furga A., Brandt N.J.;
"The human glutaryl-CoA dehydrogenase gene: report of intronic sequences and of 13 novel mutations causing glutaric aciduria type I.";
Hum. Genet. 102:452-458(1998).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM LONG).
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A.;
"Cloning of human full-length CDSs in BD Creator(TM) system donor vector.";
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02399; PubMed=15057824 [NCBI, ExPASy, EBI, Israel, Japan]
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V., Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.;
"The DNA sequence and biology of human chromosome 19.";
Nature 428:529-535(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM LONG).
TISSUE=Lymph;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
REVIEW ON VARIANTS.
DOI=10.1002/(SICI)1098-1004(1998)12:3<141::AID-HUMU1>3.0.CO;2-K; PubMed=9711871 [NCBI, ExPASy, EBI, Israel, Japan]
Goodman S.I., Stein D.E., Schlesinger S., Christensen E., Schwartz M., Greenberg C.R., Elpeleg O.N.;
"Glutaryl-CoA dehydrogenase mutations in glutaric acidemia (type I): review and report of thirty novel mutations.";
Hum. Mutat. 12:141-144(1998).
[8]
VARIANTS GA-I.
PubMed=8900227 [NCBI, ExPASy, EBI, Israel, Japan]
Biery B.J., Stein D.E., Morton D.H., Goodman S.I.;
"Gene structure and mutations of glutaryl-coenzyme A dehydrogenase: impaired association of enzyme subunits that is due to an A421V substitution causes glutaric acidemia type I in the Amish.";
Am. J. Hum. Genet. 59:1006-1011(1996).
[9]
VARIANTS GA-I ARG-101; PRO-283; THR-293; LEU-305; ARG-390 AND ILE-416.
PubMed=8900228 [NCBI, ExPASy, EBI, Israel, Japan]
Anikster Y., Shaag A., Joseph A., Mandel H., Ben-Zeev B., Christensen E., Elpeleg O.N.;
"Glutaric aciduria type I in the Arab and Jewish communities in Israel.";
Am. J. Hum. Genet. 59:1012-1018(1996).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U69141; AAB08455.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF012342; AAC52079.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF012339; AAC52079.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF012340; AAC52079.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF012341; AAC52079.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT006706; AAP35352.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AD000092; AAB51174.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC002579; AAH02579.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T44260; T44260.
T45073; T45073.
RefSeq NP_000150.1; -.
NP_039663.1; -.
UniGene Hs.532699
3D structure databases
PDB
1SIQ; X-ray; 2.10 A; A=47-438.[ExPASy / RCSB / EBI]
1SIR; X-ray; 2.60 A; A=45-438.[ExPASy / RCSB / EBI]
2R0M; X-ray; 2.70 A; A=45-438.[ExPASy / RCSB / EBI]
2R0N; X-ray; 2.30 A; A=45-438.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1SIQ; -.
1SIR; -.
2R0M; -.
2R0N; -.
ModBase Q92947.
Protein-protein interaction databases
IntAct Q92947; -.
Enzyme and pathway databases
Reactome REACT_13; Metabolism of amino acids.
Organism-specific databases
H-InvDB HIX0014810; -.
HGNC HGNC:4189; GCDH.
GenAtlas GCDH.
MIM 231670; phenotype. [NCBI / EBI]
608801; gene. [NCBI / EBI]
Orphanet 25; Glutaryl-CoA dehydrogenase deficiency.
PharmGKB PA28604; -.
GeneCards Q92947.
Gene expression databases
ArrayExpress Q92947; -.
CleanEx HS_GCDH; -.
GermOnline ENSG00000105607; Homo sapiens.
Ontologies
GO
GO:0005739; Cellular component: mitochondrion (traceable author statement from ProtInc).
GO:0004361; Molecular function: glutaryl-CoA dehydrogenase activity (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR006091; Acyl-CoA_DHase/Oxase_M.
IPR006089; Acyl-CoA_DHase_CS.
IPR006092; Acyl-CoA_DHase_N.
IPR006090; Acyl-CoA_Oxase/DHase_1.
IPR013786; AcylCoA_DH/ox_N.
IPR013764; AcylCoA_oxidase/DH_1/2_C.
Graphical view of domain structure.
Gene3D G3DSA:2.40.110.10; Acyl_CoA_DH/ox_M; 1.
G3DSA:1.10.540.10; AcylCoA_DH/ox_N; 1.
G3DSA:1.20.140.10; AcylCoA_DH_1/2_C; 1.
Pfam PF00441; Acyl-CoA_dh_1; 1.
PF02770; Acyl-CoA_dh_M; 1.
PF02771; Acyl-CoA_dh_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00072; ACYL_COA_DH_1; 1.
PS00073; ACYL_COA_DH_2; 1.
BLOCKS Q92947.
Genome annotation databases
Ensembl ENSG00000105607; Homo sapiens. [Contig view]
GeneID 2639; -.
KEGG hsa:2639; -.
NMPDR fig|9606.3.peg.15791; -.
Phylogenomic databases
HOGENOM Q92947; -.
HOVERGEN Q92947; -.
Other
LinkHub Q92947; -.
SOURCE GCDH; Homo sapiens.
ProtoNet Q92947.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; Disease mutation; FAD; Flavoprotein; Mitochondrion; Oxidoreductase; Polymorphism; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    44  44     Mitochondrion (Potential). 
CHAIN   45   438  394     Glutaryl-CoA dehydrogenase, mitochondrial. PRO_0000000526
ACT_SITE   414   414        Proton acceptor (Potential). 
VAR_SEQ   415   438        GTHDIHALILGRAITGIQAFTASK -> VVQMCSLKRRWNSL (in isoform Short). VSP_000145
VARIANT   88    88  1     R -> C (in GA-I). VAR_000366 [3D]
VARIANT   94    94  1     R -> L (in GA-I). VAR_000367 [3D]
VARIANT   101   101  1     G -> R (in GA-I). VAR_000368 [3D]
VARIANT   115   115  1     C -> Y (in GA-I). VAR_000369 [3D]
VARIANT   122   122  1     A -> V (in GA-I). VAR_000370 [3D]
VARIANT   128   128  1     R -> G (in GA-I). VAR_000371 [3D]
VARIANT   138   138  1     R -> G (in GA-I). VAR_000372 [3D]
VARIANT   139   139  1     S -> L (in GA-I). VAR_000373 [3D]
VARIANT   148   148  1     V -> I (in GA-I). VAR_000374 [3D]
VARIANT   161   161  1     R -> Q (in GA-I). VAR_000375 [3D]
VARIANT   178   178  1     G -> R (in GA-I). VAR_000376 [3D]
VARIANT   179   179  1     L -> R (in GA-I). VAR_000377 [3D]
VARIANT   191   191  1     M -> T (in GA-I). VAR_000378 [3D]
VARIANT   195   195  1     A -> T (in GA-I). VAR_000379 [3D]
VARIANT   227   227  1     R -> P (in GA-I). VAR_000380 [3D]
VARIANT   236   236  1     F -> L (in GA-I). VAR_000381 [3D]
VARIANT   257   257  1     R -> Q (in GA-I). VAR_000382 [3D]
VARIANT   257   257  1     R -> W (in GA-I). VAR_000383 [3D]
VARIANT   266   266  1     M -> V (in GA-I). VAR_000384 [3D]
VARIANT   278   278  1     P -> S (in GA-I). VAR_000385 [3D]
VARIANT   283   283  1     L -> P (in GA-I). VAR_000386 [3D]
VARIANT   293   293  1     A -> T (in GA-I). VAR_000387 [3D]
VARIANT   294   294  1     R -> W (in GA-I). VAR_000388 [3D]
VARIANT   295   295  1     Y -> H (in GA-I). VAR_000389 [3D]
VARIANT   298   298  1     A -> T. VAR_000390 [3D]
VARIANT   298   298  1     A -> V. VAR_000391 [3D]
VARIANT   305   305  1     S -> L (in GA-I). VAR_000392 [3D]
VARIANT   308   308  1     C -> S (in GA-I). VAR_000393 [3D]
VARIANT   309   309  1     L -> W (in GA-I). VAR_000394 [3D]
VARIANT   313   313  1     R -> W (in GA-I). VAR_000395 [3D]
VARIANT   333   333  1     Q -> E (in GA-I). VAR_000396 [3D]
VARIANT   349   349  1     A -> T (in GA-I). VAR_000397 [3D]
VARIANT   354   354  1     G -> R (in GA-I). VAR_000398 [3D]
VARIANT   354   354  1     G -> S (in GA-I). VAR_000399 [3D]
VARIANT   355   355  1     R -> C (in GA-I). VAR_000400 [3D]
VARIANT   355   355  1     R -> H (in GA-I). VAR_000401 [3D]
VARIANT   365   365  1     E -> K (in GA-I). VAR_000402 [3D]
VARIANT   375   375  1     C -> R (in GA-I). VAR_000403 [3D]
VARIANT   382   382  1     A -> T (in GA-I). VAR_000404 [3D]
VARIANT   383   383  1     R -> C (in GA-I). VAR_000405 [3D]
VARIANT   383   383  1     R -> H (in GA-I). VAR_000406 [3D]
VARIANT   386   386  1     R -> Q (in GA-I). VAR_000407 [3D]
VARIANT   390   390  1     G -> A (in GA-I). VAR_000409 [3D]
VARIANT   390   390  1     G -> R (in GA-I). VAR_000408 [3D]
VARIANT   392   392  1     N -> D (in GA-I). VAR_000410 [3D]
VARIANT   400   400  1     V -> M (in GA-I). VAR_000411 [3D]
VARIANT   402   402  1     R -> Q (in GA-I). VAR_000413 [3D]
VARIANT   402   402  1     R -> W (in GA-I; most common mutation identified). VAR_000412 [3D]
VARIANT   403   403  1     H -> R (in GA-I). VAR_000414 [3D]
VARIANT   406   406  1     N -> K (in GA-I). VAR_000415 [3D]
VARIANT   407   407  1     L -> P (in GA-I). VAR_000416 [3D]
VARIANT   414   414  1     E -> K (in GA-I). VAR_000417 [3D]
VARIANT   416   416  1     T -> I (in GA-I). VAR_000418 [3D]
VARIANT   421   421  1     A -> T (in GA-I). VAR_000419 [3D]
VARIANT   421   421  1     A -> V (in GA-I; impaired association of subunits). VAR_000420 [3D]
VARIANT   429   429  1     T -> M (in GA-I). VAR_000421 [3D]
VARIANT   433   433  1     A -> E (in GA-I). VAR_000422 [3D]
CONFLICT   33    33        G -> A (in Ref. 1; AAC52079). 
HELIX   56    59  4      
HELIX   62    78  17      
HELIX   80    89  10      
HELIX   95   102  8      
HELIX   120   131  12      
HELIX   135   146  12      
HELIX   149   155  7      
HELIX   158   169  12      
STRAND   175   178  4      
STRAND   184   186  3      
HELIX   188   190  3      
STRAND   194   198  5      
TURN   199   202  4      
STRAND   203   214  12      
HELIX   216   218  3      
STRAND   220   228  9      
STRAND   233   239  7      
STRAND   253   256  4      
STRAND   261   272  12      
HELIX   273   275  3      
HELIX   284   318  35      
HELIX   326   328  3      
HELIX   330   358  29      
HELIX   364   388  25      
HELIX   389   394  6      
HELIX   396   398  3      
HELIX   400   410  11      
STRAND   413   415  3      
HELIX   417   429  13      
Sequence information
Length: 438 AA [This is the length of the unprocessed precursor] Molecular weight: 48127 Da [This is the MW of the unprocessed precursor] CRC64: 415B8D510027BB63 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALRGVSVRL LSRGPGLHVL RTWVSSAAQT EKGGRTQSQL AKSSRPEFDW QDPLVLEEQL 

        70         80         90        100        110        120 
TTDEILIRDT FRTYCQERLM PRILLANRNE VFHREIISEM GELGVLGPTI KGYGCAGVSS 

       130        140        150        160        170        180 
VAYGLLAREL ERVDSGYRSA MSVQSSLVMH PIYAYGSEEQ RQKYLPQLAK GELLGCFGLT 

       190        200        210        220        230        240 
EPNSGSDPSS METRAHYNSS NKSYTLNGTK TWITNSPMAD LFVVWARCED GCIRGFLLEK 

       250        260        270        280        290        300 
GMRGLSAPRI QGKFSLRASA TGMIIMDGVE VPEENVLPGA SSLGGPFGCL NNARYGIAWG 

       310        320        330        340        350        360 
VLGASEFCLH TARQYALDRM QFGVPLARNQ LIQKKLADML TEITLGLHAC