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UniProtKB/Swiss-Prot entry Q9FJ82


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DAPB3_ARATH
Primary accession number Q9FJ82
Secondary accession number Q8LG90
Integrated into Swiss-Prot on October 23, 2007
Sequence was last modified on March 1, 2001 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 34)
Name and origin of the protein
Protein name Putative dihydrodipicolinate reductase 3, chloroplastic [Precursor]
Synonyms DHPR 3
EC 1.3.1.26
Gene name
Name: DAPB3
OrderedLocusNames: At5g52100
ORFNames: MSG15.20
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/5.5.297; PubMed=9872454 [NCBI, ExPASy, EBI, Israel, Japan]
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.";
DNA Res. 5:297-308(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Kim C.J., Bautista V.R., Chen H., De Los Reyes C., Wu S.Y., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION.
DOI=10.1016/j.bbagen.2004.09.008; PubMed=15652176 [NCBI, ExPASy, EBI, Israel, Japan]
Hudson A.O., Bless C., Macedo P., Chatterjee S.P., Singh B.K., Gilvarg C., Leustek T.;
"Biosynthesis of lysine in plants: evidence for a variant of the known bacterial pathways.";
Biochim. Biophys. Acta 1721:27-36(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB015478; BAB11058.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY084406; AAM60980.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT030092; ABN04830.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_200023.1; -.
UniGene At.29638
3D structure databases
HSSP P72024; 1P9L. [HSSP ENTRY / PDB]
ModBase Q9FJ82.
Organism-specific databases
TAIR At5g52100; -.
Ontologies
GO
GO:0009570; Cellular component: chloroplast stroma (inferred from direct assay from TAIR).
GO:0019684; Biological process: photosynthesis, light reaction (inferred from mutant phenotype from TAIR).
QuickGo view.
Family and domain databases
InterPro IPR000846; DapB.
IPR011770; DapB_bac/pln.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR20836; DapB_bac/pln; 1.
Pfam PF05173; DapB_C; 1.
PF01113; DapB_N; 1.
Pfam graphical view of domain structure.
ProDom PD004105; DapB; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00036; dapB; 1.
BLOCKS Q9FJ82.
Genome annotation databases
GeneID 835286; -.
GenomeReviews BA000015_GR; AT5G52100.
KEGG ath:AT5G52100; -.
NMPDR fig|3702.1.peg.27089; -.
Other
ProtoNet Q9FJ82.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Amino-acid biosynthesis; Chloroplast; Complete proteome; Diaminopimelate biosynthesis; Lysine biosynthesis; NADP; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    25  25     Chloroplast (Potential). 
CHAIN   26   298  273     Putative dihydrodipicolinate reductase 3, chloroplastic. PRO_0000307184
CONFLICT   106   106        Missing (in Ref. 2; AAM60980). 
Sequence information
Length: 298 AA [This is the length of the unprocessed precursor] Molecular weight: 32038 Da [This is the MW of the unprocessed precursor] CRC64: DC15436BDE54D2D3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAAVNCHFFQ LSRHLKPSRP SFSCSASQPS QNNIKVIING AAKEIGRAAV VAVTKARGME 

        70         80         90        100        110        120 
LAGAVDNHFV GEDIGLLCDM EEPLEIPVVS DLTMVLGSIS QGKEVGVVID FTDPSTVYEN 

       130        140        150        160        170        180 
VKQATAFGMK SVVYVPRIKP ETVSALSALC DKATMGCLVA PTLSIGSILL QQAVIMASFH 

       190        200        210        220        230        240 
YNNVELVESR PNAADLPSPE AIQIANNISN LGQIYNREDS STDVQARGQV IGEDGVRVHS 

       250        260        270        280        290 
MVLPGLPSST QVYFSSPGDV YTVKHDIIDV RSLMPGLLLA IRKVVRLKNL VYGLEKFL 

Q9FJ82 in FASTA format

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