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UniProtKB/Swiss-Prot entry Q9SR43


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PFBS_ARATH
Primary accession number Q9SR43
Secondary accession numbers Q8L8Q6 Q9SS72
Integrated into Swiss-Prot on February 12, 2003
Sequence was last modified on May 1, 2000 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 49)
Name and origin of the protein
Protein name Phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Precursor]
Synonyms EC 1.3.7.4
Phytochromobilin synthase
PFB synthase
PPhiB synthase
Gene name
Name: HY2
OrderedLocusNames: At3g09150
ORFNames: F3L24.1, MZB10.18
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
DOI=10.1105/tpc.13.2.425; PubMed=11226195 [NCBI, ExPASy, EBI, Israel, Japan]
Kohchi T., Mukougawa K., Frankenberg N., Masuda M., Yokota A., Lagarias J.C.;
"The Arabidopsis HY2 gene encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.";
Plant Cell 13:425-436(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB045112; BAB33374.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC011436; AAF14017.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC009326; AAD56331.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY099706; AAM20557.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY128900; AAM91300.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY088874; AAM67180.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_566344.2; -.
NP_850996.1; -.
UniGene At.10486
3D structure databases
ModBase Q9SR43.
Enzyme and pathway databases
BioCyc MetaCyc:MON-13949; -.
Organism-specific databases
TAIR At3g09150; -.
Gene expression databases
ArrayExpress Q9SR43; -.
Family and domain databases
InterPro IPR009249; Fe_bilin_red.
Graphical view of domain structure.
Pfam PF05996; Fe_bilin_red; 1.
Pfam graphical view of domain structure.
BLOCKS Q9SR43.
Genome annotation databases
GeneID 820069; -.
GenomeReviews BA000014_GR; AT3G09150.
KEGG ath:AT3G09150; -.
NMPDR fig|3702.1.peg.12927; -.
Other
ProtoNet Q9SR43.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Chloroplast; Complete proteome; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
TRANSIT   1     ?        Chloroplast (Potential). 
CHAIN   ?   329        Phytochromobilin:ferredoxin oxidoreductase, chloroplastic. PRO_0000013609
VAR_SEQ   75    76        Missing (in isoform 2). VSP_008970
CONFLICT   39    39        K -> N (in Ref. 4; AAM67180). 
Sequence information
Length: 329 AA [This is the length of the unprocessed precursor] Molecular weight: 38130 Da [This is the MW of the unprocessed precursor] CRC64: 98727CD1778D973C [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALSMEFGFS IGSCFKAPNP PVLISASPNK INFTLRRRKK RFLLRVSAVS YKEFAESALE 

        70         80         90        100        110        120 
ETRKRIVLEP SHLQEKYSSM TGLDGKTELQ MLAFKSSKIR LLRSMAIENE TMQVFDFAGF 

       130        140        150        160        170        180 
MEPEYDTPIF CANFFTSTNV NIVVLDLNPL HQLTDQTDYQ DKYYNKIMSI YHKYAETFPW 

       190        200        210        220        230        240 
GGKLTGESIK FFSPLVMWTR FSSSKEKHKA LFSAFLEYYQ AWLEMTIQVR EEMEPSHVRA 

       250        260        270        280        290        300 
NCEAQHKYLT WRAQKDPGHG LLKRLVGEAK AKELLRDFLF NGVDELGTKT FIDYFPEYQT 

       310        320 
EDGTVSDKRS IIGKSYETRP WDLTGQFIG 

Q9SR43 in FASTA format

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