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HAMAP annotation rule: MF_01350

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Accession MF_01350
Dates 24-MAY-2006 (Created)
30-NOV-2009 (Last updated, Version 23)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
end case


case <OC:Archaea>
end case

Names NDH1_NuoH




case <OG:Chloroplast>
Identifier NU1C
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase subunit 1;
Short=NDH subunit 1;
AltName: Full=NADH-plastoquinone oxidoreductase subunit 1;
Gene name ndhA

else case <OC:Cyanobacteria>
Identifier NU1C
Protein name
RecName: Full=NAD(P)H-quinone oxidoreductase subunit 1;
EC=1.6.5.-;
AltName: Full=NAD(P)H dehydrogenase I subunit 1;
AltName: Full=NDH-1 subunit 1;
AltName: Full=NDH-A;
Gene name ndhA

else case <Property:METHANOG>
Identifier FPOH
Protein name
RecName: Full=F(420)H(2) oxidoreductase subunit H;
AltName: Full=F(420)H(2) dehydrogenase subunit H;
AltName: Full=FPO subunit H;
Gene name fpoH

else
Identifier NUOH
Protein name
RecName: Full=NADH-quinone oxidoreductase subunit H;
EC=1.6.99.5;
AltName: Full=NADH dehydrogenase I subunit H;
AltName: Full=NDH-1 subunit H;
Gene name nuoH
end case


case <OG:Chloroplast>
FUNCTION: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Cyanobacteria>
FUNCTION: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (By similarity).

else case <Property:METHANOG>
FUNCTION: FPO shuttles electrons from F(420)H(2), via FAD and iron-sulfur (Fe-S) centers, to quinones in the F(420)H(2):heterodisulfide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).

else case <OC:Mycobacterium> or <OC:Rhodothermus>
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).

else
FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone (By similarity).
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>
CATALYTIC ACTIVITY: NAD(P)H + plastoquinone = NAD(P)(+) + plastoquinol.

else case <OC:Bacteria> and not <OC:Cyanobacteria>
CATALYTIC ACTIVITY: NADH + quinone = NAD(+) + quinol.
end case


case <OG:Chloroplast>
SUBUNIT: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus (By similarity).

else case <OC:Cyanobacteria>
SUBUNIT: NDH-1 is composed of at least 11 different subunits (By similarity).

else case <OC:Enterobacteriaceae> or <OC:Shewanellaceae> or <OC:Pseudomonadaceae>
SUBUNIT: NDH-1 is composed of 13 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else case <OC:Deinococci>
SUBUNIT: NDH-1 is composed of 15 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else case <Property:METHANOG>
SUBUNIT: FPO is composed of at least 12 different subunits. Subunits fpoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).

else
SUBUNIT: NDH-1 is composed of 14 different subunits. Subunits nuoA, H, J, K, L, M, N constitute the membrane sector of the complex (By similarity).
end case


case <OG:Chloroplast>
SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <OC:Archaea>
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (Potential).

else case <Property:Thylakoid>
SUBCELLULAR LOCATION: Cellular thylakoid membrane; Multi-pass membrane protein (By similarity).

else case <Property:Membrane=1> and <OC:Bacteria>
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (Potential).

else case <Property:Membrane=2> and <OC:Bacteria>
SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein (Potential).
end case

SIMILARITY: Belongs to the complex I subunit 1 family.
PROSITE PS00667; COMPLEX1_ND1_1; 1;
PS00668; COMPLEX1_ND1_2; 1;
Pfam PF00146; NADHdh; 1;
case <OG:Chloroplast>
General Transmembrane; -; 5-9; trigger=Yes;
else
General Transmembrane; -; 8-9; trigger=Yes;
end case


case <OG:Chloroplast> or <Property:Thylakoid>

else case <Property:Membrane=2>

else
end case


case <OG:Chloroplast> or <OC:Cyanobacteria>

else case not <OC:Mycobacterium> and not <OC:Rhodothermus> and not <OC:Archaea>
end case


case <OC:Methanosarcinales>
FAD.

else
NAD.
end case

GO:0055114; Biological process: oxidation reduction.

case <OC:Cyanobacteria> or <OG:Chloroplast>
GO:0019684; Biological process: photosynthesis, light reaction.
end case


case not <OC:Archaea>
GO:0016655; Molecular function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor.
end case


case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.

else case <OC:Archaea>
GO:0005886; Cellular component: plasma membrane.

else case <Property:Thylakoid>
GO:0042651; Cellular component: thylakoid membrane.

else case <Property:Membrane=1> and <OC:Bacteria>
GO:0005886; Cellular component: plasma membrane.

else case <Property:Membrane=2> and <OC:Bacteria>
GO:0005886; Cellular component: plasma membrane.
end case




Size range: 318-467 amino acids
Related UniRules: None
Template: P26522 (NU1C_SYNY3); P29920 (NQO8_PARDE); Q60019 (NQO8_THET8); P0AFD4 (NUOH_ECOLI); P42032 (NUOH_RHOCA): [Recover all]
Scope: Bacteria
Archaea; Methanosarcinales
Plastid
Fusion: Nter: None; Cter: MF_01351 (nuoI)
Duplicate: in ACIBL, CYTH3, GEOMG, GEOSL, NITMU, NITOC, RHIEC, RHIME, RHOP2, RHOP5, RHOPA, RHOPB, RHOPS, RHOS1, RHOS4, SOLUE, SYMTH, SYNFM
Plasmid encoded: in RHIME
Comments: 14 proteins form the NDH-1 complex in most bacteria whereas only 11 genes are encoded in cyanobacteria and chloroplast genomes, and 12 in archea. THET8 and PARDE are annotated with an other nomenclature. See: MEDLINE=95317406; PubMed=7796904; DOI=10.1016/0014-5793(95)00548-N; Friedrich T., Steinmuller K., Weiss H.; "The proton-pumping respiratory complex I of bacteria and mitochondria and its homologue in chloroplasts."; FEBS Lett. 367:107-111(1995). See: MEDLINE=98115918; PubMed=9448329; Sazanov L.A., Burrows P.A., Nixon P.J.; "The plastid ndh genes code for an NADH-specific dehydrogenase: isolation of a complex I analogue from pea thylakoid membranes."; Proc. Natl. Acad. Sci. U.S.A. 95:1319-1324(1998). See: MEDLINE=20421945; PubMed=10940377; DOI=10.1016/S0014-5793(00)01867-6; Friedrich T., Scheide D.; "The respiratory complex I of bacteria, archaea and eukarya and its module common with membrane-bound multisubunit hydrogenases."; FEBS Lett. 479:1-5(2000). In some bacteria (Enterobacteriaceae, Pseudomonadaceae and Shewanellaceae), NDH-1 is made of 13 subunits as there is a fusion of subunits C and D. See: PubMed=16023073; Melo A.M., Lobo S.A., Sousa F.L., Fernandes A.S., Pereira M.M., Hreggvidsson G.O., Kristjansson J.K., Saraiva L.M., Teixeira M.; "A nhaD Na+/H+ antiporter and a pcd homologues are among the Rhodothermus marinus complex I genes."; Biochim. Biophys. Acta 1709:95-103(2005). In Deinococcus-Thermus bacteria, NDH-I is composed of 15 subunits See: PubMed=16469879; DOI=10.1126/science.1123809; Sazanov L.A., Hinchliffe P.; "Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus."; Science 311:1430-1436(2006). In NOCFA is C-terminally fused with nuoI, another subunit of the same complex.

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