GlyConnect

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• • • Glycomics

  • • Database

  UniCarb-DB

  Glycan structures and associated mass spectrometry data
• • • Proteins & Proteomes
  • • Glycomics

  • • Software tool

  Swiss Mass Abacus

  Intuitive calculator of peptide and glycopeptide masses
• • • Glycomics

  • • Software tool

  SugarSketcher

  Fast, intuitive, SNFG-compliant glycan structure drawing
• • • Glycomics

  • • Database

  SugarBind

  Pathogen Sugar-Binding Database
• • • Glycomics

  • • Software tool

  GlyS3

  Match a glycan substructure to a database of full structures
• • • Glycomics

  • • Software tool

  Glynsight

  Visualise and compare glycan expression profiles
• • • Glycomics

  • • Software tool

  Glydin'

  Network representation of known glycan determinants
• • • Proteins & Proteomes
  • • Glycomics

  • • Software tool

  GlycoSiteAlign

  Multiple alignment of sequences around glycosylation sites
• • • Glycomics

  • • Software tool

  GlycoDigest

  In silico digestion of glycans by exoglycosidases
• • • Glycomics

  • • Software tool

  EpitopeXtractor

  Compare glycan structures to Glydin' network's collection
• • • Proteins & Proteomes
  • • Glycomics

  • • Software tool

  GlycoMod

  Possible oligosaccharide structures on proteins from masses
• • • Glycomics

  • • Software tool

  GlyConnect Compozitor

  Contextualises glycan composition sets
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  Glyco@Expasy

  Zooming in on web-based glycoinformatics resources
• • • Systems Biology
    • , Glycomics

  • • Software tool

  HMO-Glycologue

  Simulator of Human Milk Oligosaccharide synthesis
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  GlyConnect SPARQL endpoint

  SPARQL access to GlyConnect
• • • Glycomics

  • • Database

  GAG-DB

  3D structures of glycosaminoglycans
• • • Proteins & Proteomes
  • • Glycomics

  • • Software tool

  MzJava

  Open source Java class library to process MS fragmentation
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  UniLectin

  Structural and functional classification of lectins
• • • Metabolomics

  • • Software tool

  MSight

  Mass Spectrometry Imager
• • • Proteins & Proteomes

  • • Software tool

  Sulfinator

  Predict tyrosine sulfation sites in protein sequences
• • • Proteins & Proteomes

  • • Software tool

  PeptideMass

  Theoretical protein cleavage by a given enzyme
• • • Proteins & Proteomes

  • • Software tool

  Myristoylator

  N-terminal myristoylation of proteins by neural networks
• • • Proteins & Proteomes

  • • Software tool

  FindPept

  Unspecific protein cleavage from experimental masses
• • • Proteins & Proteomes

  • • Software tool

  FindMod

  Potential PTMs and single amino acid substitutions
• • • Genes & Genomes
  • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  ViralZone

  Fact sheets about viruses linked to sequence databases
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe

  Viral genomics pipeline
• • • Genes & Genomes
  • • Evolution & Phylogeny

  • • Software tool

  BEAST2 - COVID-19 Monitoring

  Epidemiological dynamics in real-time
• • • Text mining & Machine learning

  • • Software tool

  Computational Linguistics for COVID-19

  Central hub in computational linguistics for COVID-19
• • • Genomics
  • • Population genetics

  • • Software tool

  V-pipe SARS-CoV-2

  V-pipe pipeline for SARS-CoV-2 sequencing data
• • • Text mining & Machine learning

  • • Software tool

  COVTriage

  Rank the COVID-19 literature according to COVoc ontology
• • • Genes & Genomes

  • • Database
  • • Software tool

  SPSP | Swiss Pathogen Surveillance Platform

  A secure NGS One-health online platform
• • • Genomics
  • • Evolution & Phylogeny

  • • Software tool

  Nextclade

  Clade assignment, mutation calling & QC for virus sequences
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  BEAST2

  Bayesian evolutionary analysis by sampling trees
• • • Genes & Genomes
  • • Evolution biology

  • • Software tool

  GenSpectrum

  Real-time pathogen genomic sequence analysis
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Evolution & Phylogeny

  • • Database

  OrthoDB SPARQL endpoint

  SPARQL access to the OrthoDB catalog of orthologs
• • • Genomics
  • • Evolution biology

  • • Software tool

  Nextstrain

  Impact of pathogen genome data on science and public health
• • • Genomics
    • , Transcriptomics
  • • Evolution biology

  • • Software tool

  BUSCO

  From QC to gene prediction and phylogenomics
• • • Evolution & Phylogeny

  • • Software tool

  OrthoLoger

  Accurate and scalable inference of groups of orthologs
• • • Genes & Genomes
    • , Genomics
    • , Metagenomics

  • • Software tool

  mVIRs

  Prediction tool for inducible, bacteria-infecting viruses
• • • Proteins & Proteomes

  • • Database

  UniProtKB/Swiss-Prot

  Protein knowledgebase
• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Proteins & Proteomes

  • • Software tool

  PRATT

  Conserved patterns in a set of protein sequences
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  HAMAP

  UniProtKB family classification and annotation
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Proteins & Proteomes

  • • Database

  HAMAP SPARQL endpoint

  SPARQL access to the HAMAP annotation rules
• • • Proteins & Proteomes

  • • Database

  PROSITE

  Protein family and domain database
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Proteins & Proteomes
  • • Text mining & Machine learning

  • • Database

  MHC Motif Atlas

  MHC Motif Atlas